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AT5G53560.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25641898 (2015): plasma membrane
  • PMID:23990937 (2013): plasma membrane
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:22215637 (2012): plasma membrane
  • PMID:21433285 (2011): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:18998720 (2009): extracellular region
  • PMID:17644812 (2007): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:16618929 (2006): endoplasmic reticulum
  • PMID:15322131 (2004): plastid
  • PMID:15060130 (2004): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : cytochrome B5 isoform E
Curator
Summary (TAIR10)
Encodes a cytochrome b5 isoform that can be reduced by AtCBR, a cytochrome b5 reductase.
Computational
Description (TAIR10)
cytochrome B5 isoform E (CB5-E); FUNCTIONS IN: heme binding; LOCATED IN: chloroplast thylakoid membrane, endoplasmic reticulum, plasma membrane, endoplasmic reticulum membrane, vacuole; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome b5, heme-binding site (InterPro:IPR018506), Cytochrome b5 (InterPro:IPR001199); BEST Arabidopsis thaliana protein match is: cytochrome B5 isoform B (TAIR:AT2G32720.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:20682eggNOG:COG5274eggNOG:KOG0537EMBL:AB007801EMBL:AB015476EMBL:AY080878EMBL:AY087070
EMBL:AY114045EMBL:CP002688EMBL:F20001EnsemblPlants:AT5G53560EnsemblPlants:AT5G53560.1entrez:835438Gene3D:3.10.120.10
GeneID:835438Genevisible:Q42342GO:GO:0005773GO:GO:0005774GO:GO:0005783GO:GO:0005789GO:GO:0005886
GO:GO:0009535GO:GO:0016021GO:GO:0020037GO:GO:0046872GO:GO:0055114Gramene:AT5G53560.1hmmpanther:PTHR19359
hmmpanther:PTHR19359:SF22HOGENOM:HOG000039853InParanoid:Q42342IntAct:Q42342InterPro:IPR001199InterPro:IPR018506KEGG:ath:AT5G53560
OMA:YHIGQIDPaxDb:Q42342Pfam:PF00173Pfam:Q42342Pfscan:PS50255PhylomeDB:Q42342PIR:T52469
PRIDE:Q42342PRINTS:PR00363PRO:PR:Q42342PROSITE:PS00191PROSITE:PS50255ProteinModelPortal:Q42342Proteomes:UP000006548
Reactome:R-ATH-196836RefSeq:NP_200168.1scanprosite:PS00191SMART:SM01117SMR:Q42342STRING:3702.AT5G53560.1SUPFAM:SSF55856
SwissPalm:Q42342TAIR:AT5G53560tair10-symbols:ATB5-Atair10-symbols:ATCB5-Etair10-symbols:B5 #2tair10-symbols:CB5-ETMHMM:TMhelix
UniGene:At.20842UniProt:Q42342
Coordinates (TAIR10) chr5:+:21759628..21760353
Molecular Weight (calculated) 15084.90 Da
IEP (calculated) 4.93
GRAVY (calculated) -0.34
Length 134 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSDRKVLSF EEVSKHNKTK DCWLIISGKV YDVTPFMDDH PGGDEVLLSS TGKDATNDFE DVGHSDTARD MMDKYFIGEI DSSSVPATRT YVAPQQPAYN
101: QDKTPEFIIK ILQFLVPILI LGLALVVRHY TKKD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)