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AT5G53550.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : YELLOW STRIPE like 3
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
YELLOW STRIPE like 3 (YSL3); CONTAINS InterPro DOMAIN/s: Oligopeptide transporter OPT superfamily (InterPro:IPR004813); BEST Arabidopsis thaliana protein match is: YELLOW STRIPE like 2 (TAIR:AT5G24380.1); Has 1791 Blast hits to 1736 proteins in 561 species: Archae - 19; Bacteria - 890; Metazoa - 0; Fungi - 282; Plants - 448; Viruses - 1; Other Eukaryotes - 151 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1993-MONOMERBioCyc:ARA:GQT-1994-MONOMERBioGrid:20681eggNOG:COG1297
eggNOG:ENOG410IK9XEMBL:AB015476EMBL:AK226687EMBL:CP002688
EMBL:DQ385057EnsemblPlants:AT5G53550EnsemblPlants:AT5G53550.1EnsemblPlants:AT5G53550.2
entrez:835437GeneID:835437Genevisible:Q2EF88GO:GO:0003006
GO:GO:0005886GO:GO:0006811GO:GO:0009624GO:GO:0016021
GO:GO:0048316GO:GO:0055072GO:GO:0055085Gramene:AT5G53550.1
Gramene:AT5G53550.2hmmpanther:PTHR31645hmmpanther:PTHR31645:SF8HOGENOM:HOG000237697
InParanoid:Q2EF88InterPro:IPR004813KEGG:ath:AT5G53550OMA:LAMGLHQ
PaxDb:Q2EF88Pfam:PF03169Pfam:Q2EF88PhylomeDB:Q2EF88
PRIDE:Q2EF88PRO:PR:Q2EF88ProteinModelPortal:Q2EF88Proteomes:UP000006548
RefSeq:NP_001190532.1RefSeq:NP_200167.2STRING:3702.AT5G53550.1TAIR:AT5G53550
tair10-symbols:ATYSL3tair10-symbols:YSL3TCDB:2.A.67.2.4TIGRfam:TIGR00728
TIGRFAMs:TIGR00728TMHMM:TMhelixUniGene:At.49426UniProt:Q2EF88
Coordinates (TAIR10) chr5:+:21756081..21758776
Molecular Weight (calculated) 74153.50 Da
IEP (calculated) 8.88
GRAVY (calculated) 0.44
Length 675 amino acids
Sequence (TAIR10)
(BLAST)
001: MRSMMMEREG RNEIEREVID DLEETQNEGD DFKSIPPWKE QITFRGIVAS LIIGIIYSVI VMKLNLTTGL VPNLNVSAAL LAFVFLRSWT KLLTKAGIVT
101: KPFTKQENTV VQTCAVACYS IAVGGGFGSY LLGLNRITYE QSGGTHTDGN YPEGTKEPGI GWMTAFLFFT CFVGLLALVP LRKIMIIDYK LTYPSGTATA
201: VLINGFHTPK GNKMAKKQVF GFVKYFSFSF IWAFFQWFFS GGTECGFIQF PTFGLEALKN TFYFDFSMTY VGAGMICPHI VNISLLFGAV LSWGIMWPLI
301: KGLKGDWFPS TLPENSMKSL NGYKVFISIS LILGDGLYQF IKILFKTGIN MYVKLNNRNS GKSNSEKDKQ SIADLKRDEI FVRDSIPLWV AAVGYAAFSV
401: VSIIAIPIMF PELKWYFIVV AYMLAPSLGF SNAYGAGLTD MNMAYNYGKV ALFILAAMAG KQNGVVAGLV GCGLIKSIVS ISSDLMHDFK TGHLTLTSPR
501: SMLVSQAIGT AIGCVVAPLT FFLFYKAFDV GNQEGEYKAP YALVYRNMAI LGVEGFSALP QHCLQLCYGF FAFAVAANLV RDRLPDKIGN WVPLPMAMAV
601: PFLVGGYFAI DMCVGSLIVF AWNMRDRVKA GLMVPAVASG LICGDGLWIL PSSVLALAGV RPPICMGFMP SKYSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)