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AT5G53490.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
thylakoid lumenal 17.4 kDa protein, chloroplast, identical to SP:P81760 Thylakoid lumenal 17.4 kDa protein, chloroplast precursor (P17.4) {Arabidopsis thaliana}. Putative pentapeptide protein.
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pentapeptide repeat (InterPro:IPR001646); BEST Arabidopsis thaliana protein match is: Pentapeptide repeat-containing protein (TAIR:AT1G12250.2); Has 2348 Blast hits to 1825 proteins in 378 species: Archae - 42; Bacteria - 1727; Metazoa - 7; Fungi - 0; Plants - 151; Viruses - 0; Other Eukaryotes - 421 (source: NCBI BLink).
Protein Annotations
BioGrid:20675EMBL:AB015476EMBL:AF370552EMBL:BT003410EMBL:CP002688EnsemblPlants:AT5G53490EnsemblPlants:AT5G53490.1
entrez:835431ExpressionAtlas:P81760GeneID:835431Genevisible:P81760GO:GO:0009543hmmpanther:PTHR14136hmmpanther:PTHR14136:SF11
HOGENOM:HOG000243523InParanoid:P81760IntAct:P81760InterPro:IPR001646Pfam:P81760Pfam:PF13599PhylomeDB:P81760
PRIDE:P81760PRO:PR:P81760ProteinModelPortal:P81760Proteomes:UP000006548RefSeq:NP_200161.2RefSeq:NP_851183.1SMR:P81760
SUPFAM:SSF141571TAIR:AT5G53490UniGene:At.20426UniGene:At.70747UniProt:P81760
Coordinates (TAIR10) chr5:-:21723488..21724621
Molecular Weight (calculated) 25645.70 Da
IEP (calculated) 6.02
GRAVY (calculated) -0.09
Length 236 amino acids
Sequence (TAIR10)
(BLAST)
001: MASLPVQFTR NQISSPFFSV NLRREPRSLV TVHCSAGENR ENGEGVKKSL FPLKELGSIA CAALCACTLT IASPVIAANQ RLPPLSTEPD RCEKAFVGNT
101: IGQANGVYDK PLDLRFCDYT NDQTNLKGKT LSAALMVGAK FDGADMTEVV MSKAYAVEAS FKGVNFTNAV IDRVNFGKSN LKGAVFRNTV LSGSTFEEAN
201: LEDVVFEDTI IGYIDLQKIC RNESINEEGR LVLGCR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)