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AT5G53370.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:16356755 (2006): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : pectin methylesterase PCR fragment F
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
pectin methylesterase PCR fragment F (PMEPCRF); FUNCTIONS IN: pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT3G49220.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G53370-MONOMEREC:3.1.1.11eggNOG:COG4677eggNOG:ENOG410IF38
EMBL:AB013388EMBL:AF360340EMBL:AY051077EMBL:CP002688
EnsemblPlants:AT5G53370EnsemblPlants:AT5G53370.1entrez:835418Gene3D:1.20.140.40
Gene3D:2.160.20.10GeneID:835418Genevisible:Q9FK05GO:GO:0005618
GO:GO:0016021GO:GO:0030599GO:GO:0042545GO:GO:0043086
GO:GO:0045330GO:GO:0045490GO:GO:0046910GO:GO:0071944
Gramene:AT5G53370.1gramene_pathway:3.1.1.11gramene_pathway:PWY-1081hmmpanther:PTHR31707
hmmpanther:PTHR31707:SF8HOGENOM:HOG000217409InParanoid:Q9FK05InterPro:IPR000070
InterPro:IPR006501InterPro:IPR011050InterPro:IPR012334InterPro:IPR033131
iPTMnet:Q9FK05KEGG:00040+3.1.1.11KEGG:00500+3.1.1.11KEGG:ath:AT5G53370
OMA:EHSSRRFPaxDb:Q9FK05Pfam:PF01095Pfam:PF04043
Pfam:Q9FK05PhylomeDB:Q9FK05PRIDE:Q9FK05PRO:PR:Q9FK05
PROSITE:PS00503ProteinModelPortal:Q9FK05Proteomes:UP000006548RefSeq:NP_200149.1
scanprosite:PS00503SMART:SM00856SMR:Q9FK05STRING:3702.AT5G53370.1
SUPFAM:SSF101148SUPFAM:SSF51126TAIR:AT5G53370tair10-symbols:ATPMEPCRF
tair10-symbols:PMEPCRFTIGRfam:TIGR01614TIGRFAMs:TIGR01614TMHMM:TMhelix
UniGene:At.24561UniGene:At.29558UniPathway:UPA00545UniProt:Q9FK05
Coordinates (TAIR10) chr5:-:21649683..21651530
Molecular Weight (calculated) 64244.60 Da
IEP (calculated) 7.72
GRAVY (calculated) -0.21
Length 587 amino acids
Sequence (TAIR10)
(BLAST)
001: MGYDRLGPSG PSNPNQKDPA TSLPELQKKT KTKLILFTLA VLVVGVVCFG IFAGIRAVDS GKTEPKLTRK PTQAISRTCS KSLYPNLCID TLLDFPGSLT
101: ADENELIHIS FNATLQKFSK ALYTSSTITY TQMPPRVRSA YDSCLELLDD SVDALTRALS SVVVVSGDES HSDVMTWLSS AMTNHDTCTD GFDEIEGQGG
201: EVKDQVIGAV KDLSEMVSNC LAIFAGKVKD LSGVPVVNNR KLLGTEETEE LPNWLKREDR ELLGTPTSAI QADITVSKDG SGTFKTIAEA IKKAPEHSSR
301: RFVIYVKAGR YEEENLKVGR KKTNLMFIGD GKGKTVITGG KSIADDLTTF HTATFAATGA GFIVRDMTFE NYAGPAKHQA VALRVGGDHA VVYRCNIIGY
401: QDALYVHSNR QFFRECEIYG TVDFIFGNAA VILQSCNIYA RKPMAQQKIT ITAQNRKDPN QNTGISIHAC KLLATPDLEA SKGSYPTYLG RPWKLYSRVV
501: YMMSDMGDHI DPRGWLEWNG PFALDSLYYG EYMNKGLGSG IGQRVKWPGY HVITSTVEAS KFTVAQFISG SSWLPSTGVS FFSGLSQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)