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AT5G53350.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
FP Images

Arabidopsis cell culture (mitochondrial marker)

At5g53350-GFP
(full-length)
mitochondrial marker-RFPoverlay

Images by Sandra Tanz

Arabidopsis cell culture (plastidal marker)

At5g53350-GFP
(full-length)
plastidal marker-RFPoverlay

Images by Sandra Tanz
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : CLP protease regulatory subunit X
Curator
Summary (TAIR10)
CLP protease regulatory subunit CLPX mRNA, nuclear gene
Computational
Description (TAIR10)
CLP protease regulatory subunit X (CLPX); FUNCTIONS IN: unfolded protein binding, nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: protein folding; LOCATED IN: mitochondrion, mitochondrial matrix; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-2 (InterPro:IPR013093), Clp protease, ATP-binding subunit ClpX (InterPro:IPR004487); BEST Arabidopsis thaliana protein match is: ATP-dependent Clp protease (TAIR:AT1G33360.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G53350-MONOMEReggNOG:COG1219eggNOG:KOG0745EMBL:AB013388EMBL:AF036328EMBL:AY035103EMBL:AY142561
EMBL:CP002688EnsemblPlants:AT5G53350EnsemblPlants:AT5G53350.1entrez:835416Gene3D:3.40.50.300GeneID:835416Genevisible:Q9FK07
GO:GO:0005524GO:GO:0005739GO:GO:0006457GO:GO:0008233Gramene:AT5G53350.1hmmpanther:PTHR11262hmmpanther:PTHR11262:SF11
HOGENOM:HOG000010093InterPro:IPR003593InterPro:IPR003959InterPro:IPR004487InterPro:IPR019489InterPro:IPR027417iPTMnet:Q9FK07
KEGG:ath:AT5G53350KO:K03544OMA:SKHMDILPaxDb:Q9FK07Pfam:PF07724Pfam:PF10431PhylomeDB:Q9FK07
ProteinModelPortal:Q9FK07Proteomes:UP000006548RefSeq:NP_568792.1SMART:SM00382SMART:SM01086SMR:Q9FK07STRING:3702.AT5G53350.1
SUPFAM:SSF52540TAIR:AT5G53350tair10-symbols:CLPXTIGRfam:TIGR00382TIGRFAMs:TIGR00382UniGene:At.21717UniProt:Q9FK07
Coordinates (TAIR10) chr5:+:21644060..21647503
Molecular Weight (calculated) 61967.50 Da
IEP (calculated) 7.91
GRAVY (calculated) -0.34
Length 579 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAALRSNTS RETASLTLSH FRYFIFNRIH TARTATSPPH CNHRSKSDEK FPYKISSLGT SFLDNRGGGE RRNSTKCYAA QKKLSGVGSS VVILSSQGDP
101: PDLWQPPGDG VSVRVNGSSV NLGRGGGGGG SSPGGPGNGT GSNSKEDCWG GSNLGSDFPT PKEICKGLNK FVIGQERAKK VLSVAVYNHY KRIYHESSQK
201: RSAGETDSTA AKPADDDMVE LEKSNILLMG PTGSGKTLLA KTLARFVNVP FVIADATTLT QAGYVGEDVE SILYKLLTVA DYNVAAAQQG IVYIDEVDKI
301: TKKAESLNIS RDVSGEGVQQ ALLKMLEGTI VNVPEKGARK HPRGDNIQID TKDILFICGG AFVDIEKTIS ERRHDSSIGF GAPVRANMRA GGVTNAAVAS
401: NLMETVESSD LIAYGLIPEF VGRFPVLVSL SALTENQLMQ VLTEPKNALG KQYKKMYQMN SVKLHFTESA LRLIARKAIT KNTGARGLRA LLESILMDSM
501: YEIPDEGTGS DMIEAVVVDE EAVEGEGRRG SGAKILRGKG ALARYLSETN SKDSPQTTKE GSDGETEVEA EIPSVVASM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)