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AT5G53330.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ubiquitin-associated/translation elongation factor EF1B protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ubiquitin-associated/translation elongation factor EF1B protein; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IXQ6eggNOG:ENOG410YGZ6EMBL:AY084524EMBL:CP002688
EnsemblPlants:AT5G53330EnsemblPlants:AT5G53330.1entrez:835414GeneID:835414
GO:GO:0003746Gramene:AT5G53330.1hmmpanther:PTHR15960HOGENOM:HOG000030518
InterPro:IPR009060InterPro:IPR015940KEGG:ath:AT5G53330OMA:SYNALHE
Pfscan:PS50030PhylomeDB:Q8LG11PROSITE:PS50030Proteomes:UP000006548
RefSeq:NP_568790.1SMR:Q8LG11STRING:3702.AT5G53330.1SUPFAM:SSF46934
TAIR:AT5G53330UniGene:At.19882UniGene:At.49168UniProt:Q8LG11
Coordinates (TAIR10) chr5:+:21639236..21640716
Molecular Weight (calculated) 24277.30 Da
IEP (calculated) 6.90
GRAVY (calculated) -0.72
Length 221 amino acids
Sequence (TAIR10)
(BLAST)
001: MDYDYRNKSG GPSYPRPMYG PPSTSPSPSS NHPMYGYPKI GQQTGPGPQF FSPPERNSSF QHNTSPSSGI GIRVNLKPEY RITPPPQLLP RVGDIHRSSF
101: QFDFGLERKV LAEAEKDNPD WSKFGSENPP AKFHEPSPSS VGQMQGVDHV VMKYTASGLN REAVNIAVAN YGDNPTKVQE FANGFTAIRE MGFPTNAVAD
201: ALFMFENDTD KALAHLLHGS S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)