AT5G53280.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 ASURE: plastid What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : plastid division1 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
An integral outer envelope membrane protein (as its homolog PDV2), component of the plastid division machinery. Similar to ARC5, PDV1 localized to a discontinuous ring at the division site in wild-type plants. PDV1 and PDV2 are required for localization of ARC5 at the chloroplast division site. Topological analysis showed that the large N-terminal region of PDV1 upstream of the transmembrane helix bearing a putative coiled-coil domain is exposed to the cytosol. Mutation of the conserved PDV1 C-terminal Gly residue did not block PDV1 insertion into the outer envelope membrane but did abolish its localization to the division site. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
PLASTID DIVISION1 (PDV1); BEST Arabidopsis thaliana protein match is: plastid division2 (TAIR:AT2G16070.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:21607586..21609080 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 30677.20 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.98 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.55 | ||||||||||||||||||||||||||||||||||||||||
| Length | 272 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGEMEIEEIE AVLEKIWDLH DKLSDEIHLI SKSHFLKSVK PSNRSEKRKN PHGNSGEDKR PGYVFIKGFA VDDNDSTIQE AKSLNAIRTA LENLEDQLEF 101: FHTIHTQQRT EKDVAIARLE QSRILLAMRL AEHHGKNYGV LEEALAFVGS IKSNSHYVSP DHLYDSSRNP DGANSIPDGI ESNFVINAFA STFGFAKRAL 201: GFNHVKGVLG NAAIFAISVV AMLHLHQVAT SEHHLQKKED RFYRSQQRKT YGRDKSSADR SLDHLDVMMA RG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)