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AT5G53250.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:16356755 (2006): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : arabinogalactan protein 22
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
arabinogalactan protein 22 (AGP22); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1070 (InterPro:IPR009424); BEST Arabidopsis thaliana protein match is: arabinogalactan protein 20 (TAIR:AT3G61640.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
EMBL:AB013388EMBL:AK228915EMBL:BT010777EMBL:BT011258
EMBL:CP002688EnsemblPlants:AT5G53250EnsemblPlants:AT5G53250.1entrez:835406
GeneID:835406Genevisible:Q9FK16GO:GO:0005886GO:GO:0031225
Gramene:AT5G53250.1hmmpanther:PTHR33374hmmpanther:PTHR33374:SF2HOGENOM:HOG000238140
InParanoid:Q9FK16InterPro:IPR009424KEGG:ath:AT5G53250OMA:SSKVMFG
PaxDb:Q9FK16Pfam:PF06376Pfam:Q9FK16PhylomeDB:Q9FK16
PRO:PR:Q9FK16Proteomes:UP000006548RefSeq:NP_200137.1STRING:3702.AT5G53250.1
TAIR:AT5G53250tair10-symbols:AGP22tair10-symbols:ATAGP22TMHMM:TMhelix
UniGene:At.29564UniProt:Q9FK16
Coordinates (TAIR10) chr5:+:21603715..21604007
Molecular Weight (calculated) 6672.35 Da
IEP (calculated) 5.36
GRAVY (calculated) 1.08
Length 63 amino acids
Sequence (TAIR10)
(BLAST)
1: MASLKFPLEI LAVFVIISVI LLPIAQSHSS SPAPAPTSDG TSIDQGIAYV LMMVALALTY FIH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)