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AT5G53220.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 3099 Blast hits to 2528 proteins in 332 species: Archae - 2; Bacteria - 245; Metazoa - 1059; Fungi - 555; Plants - 177; Viruses - 49; Other Eukaryotes - 1012 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IYUSeggNOG:ENOG410YIGKEMBL:AY924859EMBL:CP002688
EnsemblPlants:AT5G53220EnsemblPlants:AT5G53220.1EnsemblPlants:AT5G53220.2EnsemblPlants:AT5G53220.3
entrez:835403GeneID:835403Gramene:AT5G53220.1Gramene:AT5G53220.2
Gramene:AT5G53220.3hmmpanther:PTHR34380hmmpanther:PTHR34380:SF1KEGG:ath:AT5G53220
OMA:IYNNREDProteomes:UP000006548RefSeq:NP_001032066.1RefSeq:NP_001119424.1
RefSeq:NP_200134.2TAIR:AT5G53220UniGene:At.51092UniProt:Q5BPG9
Coordinates (TAIR10) chr5:+:21596824..21598004
Molecular Weight (calculated) 41875.70 Da
IEP (calculated) 4.17
GRAVY (calculated) -1.04
Length 368 amino acids
Sequence (TAIR10)
(BLAST)
001: MTTPVKDYIL GRDRDRDRDT MSSRRRVNKM LSFEDDGHKL TDVVDLCDSE TEQRSEEEEF ADVMDTIEEA NIGENYEDED VEACDANTSS PLSRRKRKRV
101: IASDDDDDAD DDDEDNIPIS ILKNLKPTNQ EMSDLFDTPN KGESESRRLS GQRRVSSRLN KKRVSEEVSA STERLVGIPT TDNAEDDETE EEGSESEGES
201: LDGFIIDDDD SQESVSEKSD EIGVEESDGE VGYADVMSRL RREKKPEKRK WEYEADMLAD FGKDPELCMR AVCVLFRFQT EDEKVERSSH VSNGRGFSKV
301: DAVRGTSIAL FLTDGDSAGD MKKSVEELKV FDFKGVEKCE ELARKYSKQL FQIYNNREDP FFTLPPSP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)