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AT5G53200.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Homeodomain-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
TRIPTYCHON (TRY); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-related (InterPro:IPR012287), MYB-like (InterPro:IPR017877), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT2G30420.1); Has 2274 Blast hits to 2274 proteins in 174 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 2256; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).
Protein Annotations
BioGrid:20646eggNOG:ENOG410J0INeggNOG:ENOG410YUWZEMBL:AB025622EMBL:AY161286EMBL:AY519523EMBL:BT024672
EMBL:CP002688EnsemblPlants:AT5G53200EnsemblPlants:AT5G53200.1entrez:835401Gene3D:1.10.10.60GeneID:835401Genevisible:Q8GV05
GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0006355GO:GO:0007275GO:GO:0010091
Gramene:AT5G53200.1hmmpanther:PTHR10641hmmpanther:PTHR10641:SF620HOGENOM:HOG000238078InParanoid:Q8GV05IntAct:Q8GV05InterPro:IPR001005
InterPro:IPR009057InterPro:IPR017877KEGG:ath:AT5G53200KO:K09422OMA:WIMRNSEPaxDb:Q8GV05Pfam:PF00249
Pfam:Q8GV05Pfscan:PS50090PhylomeDB:Q8GV05PRO:PR:Q8GV05PROSITE:PS50090ProteinModelPortal:Q8GV05Proteomes:UP000006548
RefSeq:NP_200132.2SMART:SM00717SMR:Q8GV05STRING:3702.AT5G53200.1SUPFAM:SSF46689TAIR:AT5G53200tair10-symbols:TRY
UniGene:At.27502UniProt:Q8GV05
Coordinates (TAIR10) chr5:+:21582913..21583960
Molecular Weight (calculated) 13006.30 Da
IEP (calculated) 9.99
GRAVY (calculated) -1.24
Length 106 amino acids
Sequence (TAIR10)
(BLAST)
001: MDNTDRRRRR KQHKIALHDS EEVSSIEWEF INMTEQEEDL IFRMYRLVGD RWDLIAGRVP GRQPEEIERY WIMRNSEGFA DKRRQLHSSS HKHTKPHRPR
101: FSIYPS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)