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AT5G53170.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 0.500
mitochondrion 0.500
ASURE: mitochondrion,plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : FTSH protease 11
Curator
Summary (TAIR10)
encodes an FtsH protease that is localized to the chloroplast and the mitochondrion
Computational
Description (TAIR10)
FTSH protease 11 (FTSH11); FUNCTIONS IN: metallopeptidase activity, ATP-dependent peptidase activity, ATPase activity; INVOLVED IN: response to heat, PSII associated light-harvesting complex II catabolic process; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M41, FtsH (InterPro:IPR005936), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642); BEST Arabidopsis thaliana protein match is: FTSH protease 4 (TAIR:AT2G26140.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BRENDA:3.4.24.B20EC:3.4.24.-eggNOG:COG0465eggNOG:KOG0734EMBL:AB025622EMBL:AY091086EMBL:AY123027
EMBL:CP002688EnsemblPlants:AT5G53170EnsemblPlants:AT5G53170.1entrez:835398Gene3D:3.40.50.300GeneID:835398Genevisible:Q9FGM0
GO:GO:0004176GO:GO:0004222GO:GO:0005524GO:GO:0005739GO:GO:0005743GO:GO:0006508GO:GO:0008237
GO:GO:0009408GO:GO:0009507GO:GO:0009535GO:GO:0009536GO:GO:0009941GO:GO:0010304GO:GO:0016021
GO:GO:0046872Gramene:AT5G53170.1HAMAP:MF_01458hmmpanther:PTHR23076hmmpanther:PTHR23076:SF40HOGENOM:HOG000217276InParanoid:Q9FGM0
InterPro:IPR000642InterPro:IPR003593InterPro:IPR003959InterPro:IPR003960InterPro:IPR005936InterPro:IPR027417iPTMnet:Q9FGM0
KEGG:ath:AT5G53170MEROPS:M41.018ncoils:CoilOMA:DIMPEKNPaxDb:Q9FGM0Pfam:PF00004Pfam:PF01434
Pfam:Q9FGM0PhylomeDB:Q9FGM0PRIDE:Q9FGM0PRO:PR:Q9FGM0PROSITE:PS00674ProteinModelPortal:Q9FGM0Proteomes:UP000006548
RefSeq:NP_568787.1scanprosite:PS00674SMART:SM00382SMR:Q9FGM0STRING:3702.AT5G53170.1SUPFAM:SSF140990SUPFAM:SSF52540
TAIR:AT5G53170tair10-symbols:FTSH11TIGRfam:TIGR01241TIGRFAMs:TIGR01241UniGene:At.7145UniProt:Q9FGM0
Coordinates (TAIR10) chr5:-:21563023..21567922
Molecular Weight (calculated) 88722.10 Da
IEP (calculated) 6.01
GRAVY (calculated) -0.29
Length 806 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSSTLQASL FLRPPLHTSS FKLYPCLFSS SSLSFCPQSL SSFYRLSSVL HNSRFRPLPC SLRQDNVASD SDFIPKDSAF EVTDSAESNR LVSDTEVSEL
101: ETNDRFVGGE ETKSGGEEAE VSNGVTEGKE EDQKKSKFRI VVLMMALWAA IKRAIEKVME WEWLSWWPFS RQEKRLEKLI AEADANPKDA ALQGALLAEL
201: NKHIPEAVVQ RFEQREHTVD SRGVAEYIRA LVITNAISEY LPDEQTGKPS SLPALLQELK HRASGNMDES FVNPGISEKQ PLHVTMVNPK VSNKSRFAQE
301: LVSTILFTVA VGLVWIMGAA ALQKYIGSLG GIGTSGVGSS SSYSPKELNK EITPEKNVKT FKDVKGCDDA KQELEEVVEY LKNPSKFTRL GGKLPKGILL
401: TGAPGTGKTL LAKAIAGEAG VPFFYRAGSE FEEMFVGVGA RRVRSLFQAA KKKAPCIIFI DEIDAVGSTR KQWEGHTKKT LHQLLVEMDG FEQNEGIIVM
501: AATNLPDILD PALTRPGRFD RHIVVPSPDV RGREEILELY LQGKPMSEDV DVKAIARGTP GFNGADLANL VNIAAIKAAV EGAEKLSSEQ LEFAKDRIVM
601: GTERKTMFVS EDSKKLTAYH ESGHAIVALN TKGAHPIHKA TIMPRGSALG MVTQLPSNDE TSVSKRQLLA RLDVCMGGRV AEELIFGLDH ITTGASSDLS
701: QATELAQYMV SSCGMSEAIG PVHIKERPSS DMQSRIDAEV VKLLREAYER VKSLLKRHEK QLHTLANALL EYETLTAEDI KRILLPKQEG EKFEEQQQEE
801: GDLVLA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)