suba logo
AT5G53110.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plasma membrane 0.678
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G46495.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG41121N2eggNOG:KOG0800EMBL:CP002688EnsemblPlants:AT5G53110EnsemblPlants:AT5G53110.1entrez:835391Gene3D:3.30.40.10
GeneID:835391GO:GO:0008270GO:GO:0016021GO:GO:0016301GO:GO:0030247Gramene:AT5G53110.1hmmpanther:PTHR14155
hmmpanther:PTHR14155:SF157InParanoid:F4KJ04InterPro:IPR001841InterPro:IPR013083InterPro:IPR025287KEGG:ath:AT5G53110OMA:IICENSR
PaxDb:F4KJ04Pfam:PF13639Pfam:PF13947Pfscan:PS50089PROSITE:PS50089ProteinModelPortal:F4KJ04Proteomes:UP000006548
RefSeq:NP_200123.2SMART:SM00184SMR:F4KJ04STRING:3702.AT5G53110.1SUPFAM:SSF57850TAIR:AT5G53110TMHMM:TMhelix
UniGene:At.29571UniProt:F4KJ04
Coordinates (TAIR10) chr5:+:21529022..21533008
Molecular Weight (calculated) 42937.00 Da
IEP (calculated) 8.56
GRAVY (calculated) -0.09
Length 382 amino acids
Sequence (TAIR10)
(BLAST)
001: MDLTKLISFS LLFLSLLIPT TTTTTSTVTC TNAVCRRDGP IIRFPFRLKH QQSHSCGYDK GFDLTCDINA GNRTTITLPF SGNFTVEEID YAAQEIWIND
101: PNNCLPQRIL QLNLNSTPFS GVYMRQFTFF NCPTSEYLRF RPLNPITCLS GKNSTVFATP SPRVINYLSS QSCRLMKTVY VPVRWPFYEQ IVSSSDLSDN
201: LWLTWRVPRC SRCEIKGGKC GIKSNSSREI ICSHVHKPAI PRRARYAIAV GAGIPGALIV FGLFCFVYSK ISSCIKRRRL VPTPEINNAQ AHYLHSSVIV
301: MGLDGPTIES YPKIVLGESK RLPKVDDATC AICLSEYEPK ETLRTIPQCQ HCFHADCIDE WLKLNGTCPV CRNSPEQILP PA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)