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AT5G53100.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 0.380
peroxisome 0.238
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NAD(P)-binding Rossmann-fold superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: multicellular organismal development, oxidation reduction, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: sepal; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT5G53090.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G53100-MONOMEReggNOG:COG1028eggNOG:KOG1208EMBL:AB025622EMBL:CP002688EnsemblPlants:AT5G53100EnsemblPlants:AT5G53100.1
entrez:835390Gene3D:3.40.50.720GeneID:835390GO:GO:0016491Gramene:AT5G53100.1hmmpanther:PTHR24320hmmpanther:PTHR24320:SF73
InterPro:IPR002347InterPro:IPR016040KEGG:ath:AT5G53100OMA:NVETANRPfam:PF00106PhylomeDB:Q9FGM6PRINTS:PR00080
PRINTS:PR00081Proteomes:UP000006548RefSeq:NP_200122.1SMR:Q9FGM6STRING:3702.AT5G53100.1SUPFAM:SSF51735TAIR:AT5G53100
UniGene:At.55519UniProt:Q9FGM6
Coordinates (TAIR10) chr5:+:21526250..21528323
Molecular Weight (calculated) 40634.40 Da
IEP (calculated) 8.67
GRAVY (calculated) -0.02
Length 364 amino acids
Sequence (TAIR10)
(BLAST)
001: MKKNDGLGWI QWMRGWFNVV QEILLQRIMA SHLQIPFHLP PLNHLTCIVT GSTSGIGSET ARQLAEAGAH VVMAVRNIKA AHELIQQWQT KWSASGEGLP
101: LNIQAMELDL LSLDSVVRFS NAWNARLAPL HVLINNAGMF AMGGAQKFSE DGYEQHMQVN HLAPALLSLL LLPSLIRASR SRIINVNSVM HYVGFVDPND
201: MNFVSGKRKF SSLSAYSSSK LAQVMFNNVL LKKLPLETGI SVVCLSPGVV QTNITRDLPR LVQDLYSALP YFIFSPQEGC RSSLFSATDP QIPNHYQKLK
301: TNEKSVCTLF ISLNCKLTNC SEEAQNVETA NRVWEKTLEL IGLPSDTVER LVEGEVVKCR YRTR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)