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AT5G53060.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.978
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RNA-binding KH domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA-binding KH domain-containing protein; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), K Homology (InterPro:IPR004087), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: RNA-binding KH domain-containing protein (TAIR:AT5G15270.1); Has 2883 Blast hits to 1912 proteins in 183 species: Archae - 0; Bacteria - 2; Metazoa - 1739; Fungi - 239; Plants - 817; Viruses - 2; Other Eukaryotes - 84 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XNN8eggNOG:KOG2190EMBL:AY062686EMBL:BT008402EMBL:CP002688EnsemblPlants:AT5G53060EnsemblPlants:AT5G53060.1
entrez:835386ExpressionAtlas:Q8W4B1Gene3D:3.30.1370.10GeneID:835386GO:GO:0006970GO:GO:0009867GO:GO:0010286
GO:GO:0010445GO:GO:0010468GO:GO:0031053GO:GO:0070878GO:GO:1900150Gramene:AT5G53060.1hmmpanther:PTHR10288
hmmpanther:PTHR10288:SF134IntAct:Q8W4B1InterPro:IPR004087InterPro:IPR004088OMA:IITICSEPfam:PF00013Pfscan:PS50084
PhylomeDB:Q8W4B1PROSITE:PS50084Proteomes:UP000006548RefSeq:NP_200118.3SMART:SM00322STRING:3702.AT5G53060.1SUPFAM:SSF54791
TAIR:AT5G53060UniGene:At.27262UniProt:Q8W4B1
Coordinates (TAIR10) chr5:+:21515355..21518197
Molecular Weight (calculated) 71349.20 Da
IEP (calculated) 5.94
GRAVY (calculated) -0.48
Length 652 amino acids
Sequence (TAIR10)
(BLAST)
001: MERSRSKRNY HYDQDYDGDS MPRSKPRYNN NYHFGGGGGG NNRYRGGGGG GGGNGRPSKS HPETMATTTY RILCHDAKAG GVIGKSGTII KSIRQHTGAW
101: INVHELVPGD AERIIEISDN RRRDPDGRMP SFSPAQEALF SVHDRILESE AQFGYGGPPP EEEEDYGGVR PGGGRVVTRL VVSRMHVGCL LGKGGKIIEQ
201: MRIETKTHIR ILPRESNLPR CVSLSEEIVQ IVGELNAVKN ALAIVSSRLR ESQHRDRSNF QGRSHSPERS FAAAGDDYMP QLRRQSSDRF PRGNFRNNNF
301: SSRQSNYAEE APAVPVGENV YSEELVFQIL CPADKIVRVV GESQGIIDLL QNEIGVDVRV SDPVAGSDEQ IITISSEEAP DDPFFPAQEA LLHIQTQIID
401: LIPDKDNLIT TRLLVPSRDS ICLEGKAGSV SEISRLTGTS VQILAREEIP RCASINDVVI QITGEIRAAR EALVELTLLL RSHMFKELSQ KETPPASTST
501: TGPLEGVAGV MEVASSNNTI QSREGPTSSN LNLQQVSTIL PQFKEGFGSV AKAGESEHRE EVPVTTSRMA VPLVTRSTLE VVLPEAVVPK LVTKSRNKLA
601: QISEWSGASV TIVEDRPEET QNIIRISGTP EQAERAQSLL QGFILSIQED GP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)