suba logo
AT5G52975.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF1278)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF1278); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1278 (InterPro:IPR010701); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1278) (TAIR:AT5G52965.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JV09eggNOG:ENOG41106CUEMBL:BT026086EMBL:CP002688
EnsemblPlants:AT5G52975EnsemblPlants:AT5G52975.1entrez:835376GeneID:835376
Gramene:AT5G52975.1hmmpanther:PTHR31181HOGENOM:HOG000015098InterPro:IPR008502
KEGG:ath:AT5G52975OMA:SCARIVPPfam:PF05617PhylomeDB:Q147K7
Proteomes:UP000006548RefSeq:NP_568782.1TAIR:AT5G52975TMHMM:TMhelix
UniGene:At.29583UniProt:Q147K7
Coordinates (TAIR10) chr5:+:21481514..21481879
Molecular Weight (calculated) 13076.20 Da
IEP (calculated) 7.27
GRAVY (calculated) 0.52
Length 121 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSKTILSVI LIVSLCVAIF VTQGVAHMQT PPTTVPGIFP PGLPIDLVKC WSSLFNVEGC VLEIAKSIFS GKFENVEAAC CKAFSTLDAN CWPHMFPLNP
101: FFPPLLKDSC ARIVPNSPTH N
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)