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AT5G52970.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : thylakoid lumen 15.0 kDa protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
thylakoid lumen 15.0 kDa protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, thylakoid lumen, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:20620eggNOG:ENOG410IHVFeggNOG:ENOG410XR27EMBL:AB018116EMBL:AY048216EMBL:AY091710EMBL:CP002688
EnsemblPlants:AT5G52970EnsemblPlants:AT5G52970.1entrez:835375GeneID:835375Genevisible:Q9LVV5GO:GO:0009507GO:GO:0009543
GO:GO:0009579GO:GO:0031977Gramene:AT5G52970.1hmmpanther:PTHR35514hmmpanther:PTHR35514:SF1HOGENOM:HOG000242352InParanoid:Q9LVV5
IntAct:Q9LVV5KEGG:ath:AT5G52970OMA:GQEKRIAPaxDb:Q9LVV5Pfam:Q9LVV5PhylomeDB:Q9LVV5PRIDE:Q9LVV5
PRO:PR:Q9LVV5ProteinModelPortal:Q9LVV5Proteomes:UP000006548RefSeq:NP_568781.1STRING:3702.AT5G52970.1TAIR:AT5G52970UniGene:At.8648
UniProt:Q9LVV5
Coordinates (TAIR10) chr5:+:21479620..21481018
Molecular Weight (calculated) 24570.20 Da
IEP (calculated) 5.40
GRAVY (calculated) -0.09
Length 223 amino acids
Sequence (TAIR10)
(BLAST)
001: MAMLFRPPPS QCRSFSPFVF NYSSREVSSS SRLSLKTSGD EENWVSRFRS KSLSLVFSGA LALGLSLSGV GFADAKVGVN KPELLPKEFT SVIDVADFLS
101: NGQEKRIAQE IANLEKDTGF KLRVLAQNYP VTPGLAIKDF WQVDDSTIVF VADPTFGNIL NFNVGATVDL DIPRSFWSRL AGKYGNMFYW KEKGEDASIE
201: AAVMAISSCL REPVGRNNCA EIQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)