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AT5G52960.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:20061580 (2010): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3143 (InterPro:IPR021489); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IYUPeggNOG:ENOG410XW0XEMBL:AB018116EMBL:AK117117EMBL:AY085297EMBL:BT003694EMBL:CP002688
EnsemblPlants:AT5G52960EnsemblPlants:AT5G52960.1entrez:835373GeneID:835373Gramene:AT5G52960.1hmmpanther:PTHR35765hmmpanther:PTHR35765:SF2
HOGENOM:HOG000241596IntAct:Q9LVV6InterPro:IPR021489KEGG:ath:AT5G52960OMA:NKPLYSHPfam:PF11341PhylomeDB:Q9LVV6
Proteomes:UP000006548RefSeq:NP_200108.1STRING:3702.AT5G52960.1TAIR:AT5G52960UniGene:At.28246UniGene:At.70496UniProt:Q9LVV6
Coordinates (TAIR10) chr5:+:21477250..21478269
Molecular Weight (calculated) 19163.70 Da
IEP (calculated) 8.21
GRAVY (calculated) -0.42
Length 170 amino acids
Sequence (TAIR10)
(BLAST)
001: MNCVSAFEFV PSSALFPCAQ SSIPAKFLHI LSSKASISPR CRSFASSSSS TIRRKPLTLV SSKSSDAEEV SDTEDEWLKK LPEKNKPLYS HSLPCIEAWL
101: RKLGFYQSKD DRAVWLIQKP DWHAQLSLDV TDLCIRYMKS GPGNLERDME RRFSYALSRE DTENAILGGP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)