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AT5G52950.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IM13eggNOG:ENOG410Y91AEMBL:CP002688EnsemblPlants:AT5G52950
EnsemblPlants:AT5G52950.1entrez:835372GeneID:835372GO:GO:0005634
GO:GO:0006260GO:GO:0010212GO:GO:0033314Gramene:AT5G52950.1
hmmpanther:PTHR21556InParanoid:F4KHP4InterPro:IPR026153KEGG:ath:AT5G52950
OMA:KCWMKQIPANTHER:PTHR21556PaxDb:F4KHP4PRIDE:F4KHP4
ProteinModelPortal:F4KHP4Proteomes:UP000006548RefSeq:NP_200107.2TAIR:AT5G52950
UniGene:At.55516UniProt:F4KHP4
Coordinates (TAIR10) chr5:-:21473887..21476939
Molecular Weight (calculated) 106658.00 Da
IEP (calculated) 5.01
GRAVY (calculated) -0.41
Length 948 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGDLLYAKT QRFVLLIDLN PLLIKPNSEQ YLAVVISAAE KLLLFPPLSA SLFSFKFFFS SLSSLLSSSK LSSLSISSSP LSFDLPNPTL VSLKRAIDAV
101: KGYELRSSST VATAASPRGV NVAANLRQIV YDYAWEPVVR DPEIGMIPGF TDGGLDVVRS NLVVMFSPIS RDLDWVSEFL DVKSGDECFS DLDLFKSKLR
201: EIFYCVNELF DDRDIQLSWI DVKSGDERCE LGLKSGFFDS GIRELGWGHC STDSIVFGSS VVPFGLIYPA IGISPKLSTS QKFTLQASLE IADINGKPME
301: CKCGGELEFS SSEIFSGKRC DEFINLASGT EPVNHDSLVE QFCDGSTKLS IKALRMCDDL IELERYTCDT FVVHQVSQDS DQDQEEESAF WADLVFQILG
401: KETGERVAKR SSPIWQILLS YLYREGFSAL VSFSNSNGSL RTGILKPFTF SSALICVFDN GVSPQTVDHE DSRKKVSCSE YKRKPRKNSL NDISWEEFCR
501: SVKDYGQIDL EDVYFFKYSK SKKLKFLKCW MKQISKPRGC SLSVASNCNA LEDVDANPIE EKNNSSEETD KASSPLPLAE EDIALSGNRI SGKQESNTYV
601: HASESSENFF VSLPSKIKQG IESEEIDLSA LAERLVKSCV FYSSQRAEKD YSCESGTLLL VIDELTKMLL KDPKDLVAKF KKKDSSSVAS ERNCDEAGPS
701: RIVREYELQI LFRMEILRCK KGLGNEESVT QKFAKQICMF LEGIQCKLDG GFFGEWSLDK YVDKTIKARY QHILGGAVNI IYTEMDLLMF TDEDLEDSFM
801: NNEDSSQSGR ENIHSNFKNH HHSQSNEDVP GTSKQKNTEE SREAKKEVEA QGMRERARRF SSFTSWMPDL CRVWAPKQTK NSKGKADQQQ RTAKRKKEQR
901: SVEYDRVCET PMTTIETKRI RTGNKDDYEC ETLPRSSVPK ALFQDDCS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)