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AT5G52920.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:19334764 (2009): plasma membrane
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:16207701 (2006): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : plastidic pyruvate kinase beta subunit 1
Curator
Summary (TAIR10)
encodes a dominant chloroplast pyruvate kinase beta subunit. Important for seed oil biosynthesis. Ubiquitously expressed, with significantly increased expression in maturing seeds. The mutant plant has wrinkled seeds, with a 50-70% reduction in seed fatty acid content.
Computational
Description (TAIR10)
plastidic pyruvate kinase beta subunit 1 (PKP-BETA1); FUNCTIONS IN: pyruvate kinase activity; INVOLVED IN: response to cadmium ion, glycolysis, seed development, fatty acid biosynthetic process, lipid metabolic process; LOCATED IN: mitochondrion, chloroplast, chloroplast stroma; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pyruvate kinase, C-terminal-like (InterPro:IPR015795), Pyruvate kinase, active site (InterPro:IPR018209), Pyruvate kinase, beta-barrel-like (InterPro:IPR011037), Pyruvate kinase, alpha/beta (InterPro:IPR015794), Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813), Pyruvate kinase (InterPro:IPR001697), Pyruvate kinase, barrel (InterPro:IPR015793); BEST Arabidopsis thaliana protein match is: plastidial pyruvate kinase 3 (TAIR:AT1G32440.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
EC:2.7.1.40eggNOG:COG0469eggNOG:KOG2323EMBL:AB009055EMBL:AK220807EMBL:AK220873EMBL:AK221740
EMBL:AY048198EMBL:AY084507EMBL:AY091682EMBL:CP002688EnsemblPlants:AT5G52920EnsemblPlants:AT5G52920.1entrez:835369
Gene3D:2.40.33.10Gene3D:3.20.20.60Gene3D:3.40.1380.20GeneID:835369Genevisible:Q9FLW9GO:GO:0000287GO:GO:0004743
GO:GO:0005524GO:GO:0005739GO:GO:0006629GO:GO:0006633GO:GO:0009507GO:GO:0009570GO:GO:0010431
GO:GO:0016301GO:GO:0030955GO:GO:0046686GO:GO:0048316Gramene:AT5G52920.1hmmpanther:PTHR11817hmmpanther:PTHR11817:SF2
HOGENOM:HOG000021559InParanoid:Q9FLW9InterPro:IPR001697InterPro:IPR011037InterPro:IPR015793InterPro:IPR015794InterPro:IPR015795
InterPro:IPR015806InterPro:IPR015813InterPro:IPR018209KEGG:00010+2.7.1.40KEGG:00230+2.7.1.40KEGG:00620+2.7.1.40KEGG:ath:AT5G52920
KO:K00873OMA:EKMPSVNPANTHER:PTHR11817PaxDb:Q9FLW9Pfam:PF00224Pfam:PF02887Pfam:Q9FLW9
PhylomeDB:Q9FLW9PRIDE:Q9FLW9PRINTS:PR01050PRO:PR:Q9FLW9PROSITE:PS00110ProteinModelPortal:Q9FLW9Proteomes:UP000006548
RefSeq:NP_200104.1SABIO-RK:Q9FLW9scanprosite:PS00110SMR:Q9FLW9STRING:3702.AT5G52920.1SUPFAM:SSF50800SUPFAM:SSF51621
SUPFAM:SSF52935TAIR:AT5G52920tair10-symbols:PKP-BETA1tair10-symbols:PKP1tair10-symbols:PKP2TIGRfam:TIGR01064TIGRFAMs:TIGR01064
UniGene:At.20836UniPathway:UPA00109UniProt:Q9FLW9
Coordinates (TAIR10) chr5:+:21463680..21466612
Molecular Weight (calculated) 63525.70 Da
IEP (calculated) 7.04
GRAVY (calculated) -0.19
Length 579 amino acids
Sequence (TAIR10)
(BLAST)
001: MAQVVATRSI QGSMLSPNGG SVSTRSEKLL KPASFAVKVL GNEAKRSGRV SVRSRRVVDT TVRSARVETE VIPVSPEDVP NREEQLERLL EMQQFGDTSV
101: GMWSKPTVRR KTKIVCTVGP STNTREMIWK LAEAGMNVAR MNMSHGDHAS HKKVIDLVKE YNAQTKDNTI AIMLDTKGPE VRSGDLPQPI MLDPGQEFTF
201: TIERGVSTPS CVSVNYDDFV NDVEAGDMLL VDGGMMSFMV KSKTKDSVKC EVVDGGELKS RRHLNVRGKS ATLPSITEKD WEDIKFGVEN KVDFYAVSFV
301: KDAQVVHELK KYLQNSGADI HVIVKIESAD SIPNLHSIIT ASDGAMVARG DLGAELPIEE VPILQEEIIN LCRSMGKAVI VATNMLESMI VHPTPTRAEV
401: SDIAIAVREG ADAVMLSGET AHGKFPLKAA GVMHTVALRT EATITSGEMP PNLGQAFKNH MSEMFAYHAT MMSNTLGTST VVFTRTGFMA ILLSHYRPSG
501: TIYAFTNEKK IQQRLALYQG VCPIYMEFTD DAEETFANAL ATLLKQGMVK KGEEIAIVQS GTQPIWRSQS THNIQVRKV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)