suba logo
AT5G52850.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G13650.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AB009055EMBL:CP002688
EnsemblPlants:AT5G52850EnsemblPlants:AT5G52850.1entrez:835362Gene3D:1.25.40.10
GeneID:835362Genevisible:Q9FLX6GO:GO:0008270GO:GO:0009507
Gramene:AT5G52850.1hmmpanther:PTHR24015hmmpanther:PTHR24015:SF521HOGENOM:HOG000237570
InParanoid:Q9FLX6InterPro:IPR002885InterPro:IPR011990InterPro:IPR032867
KEGG:ath:AT5G52850OMA:AVSYTAMPaxDb:Q9FLX6Pfam:PF01535
Pfam:PF13041Pfam:PF14432Pfam:Q9FLX6Pfscan:PS51375
PhylomeDB:Q9FLX6PRIDE:Q9FLX6PRO:PR:Q9FLX6PROSITE:PS51375
ProteinModelPortal:Q9FLX6Proteomes:UP000006548RefSeq:NP_200097.1SMR:Q9FLX6
STRING:3702.AT5G52850.1TAIR:AT5G52850TIGRfam:TIGR00756TIGRFAMs:TIGR00756
UniGene:At.29591UniGene:At.66774UniProt:Q9FLX6
Coordinates (TAIR10) chr5:-:21414935..21417616
Molecular Weight (calculated) 98845.30 Da
IEP (calculated) 7.97
GRAVY (calculated) 0.01
Length 893 amino acids
Sequence (TAIR10)
(BLAST)
001: MTSKVVAAAA SAFLSRTNEL GNLQKSCIRI LSFCESNSSR IGLHIHCPVI KFGLLENLDL CNNLLSLYLK TDGIWNARKL FDEMSHRTVF AWTVMISAFT
101: KSQEFASALS LFEEMMASGT HPNEFTFSSV VRSCAGLRDI SYGGRVHGSV IKTGFEGNSV VGSSLSDLYS KCGQFKEACE LFSSLQNADT ISWTMMISSL
201: VGARKWREAL QFYSEMVKAG VPPNEFTFVK LLGASSFLGL EFGKTIHSNI IVRGIPLNVV LKTSLVDFYS QFSKMEDAVR VLNSSGEQDV FLWTSVVSGF
301: VRNLRAKEAV GTFLEMRSLG LQPNNFTYSA ILSLCSAVRS LDFGKQIHSQ TIKVGFEDST DVGNALVDMY MKCSASEVEA SRVFGAMVSP NVVSWTTLIL
401: GLVDHGFVQD CFGLLMEMVK REVEPNVVTL SGVLRACSKL RHVRRVLEIH AYLLRRHVDG EMVVGNSLVD AYASSRKVDY AWNVIRSMKR RDNITYTSLV
501: TRFNELGKHE MALSVINYMY GDGIRMDQLS LPGFISASAN LGALETGKHL HCYSVKSGFS GAASVLNSLV DMYSKCGSLE DAKKVFEEIA TPDVVSWNGL
601: VSGLASNGFI SSALSAFEEM RMKETEPDSV TFLILLSACS NGRLTDLGLE YFQVMKKIYN IEPQVEHYVH LVGILGRAGR LEEATGVVET MHLKPNAMIF
701: KTLLRACRYR GNLSLGEDMA NKGLALAPSD PALYILLADL YDESGKPELA QKTRNLMTEK RLSKKLGKST VEVQGKVHSF VSEDVTRVDK TNGIYAEIES
801: IKEEIKRFGS PYRGNENASF HSAKQAVVYG FIYASPEAPV HVVKNKILCK DCHEFVSILT RLVDKKITVR DGNQVHIFKN GECSCKREET SFV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)