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AT5G52820.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.995
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : WD-40 repeat family protein / notchless protein, putative
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
WD-40 repeat family protein / notchless protein, putative; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), NLE (InterPro:IPR012972), WD40 repeat (InterPro:IPR001680), G-protein, beta subunit (InterPro:IPR001632), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT3G49660.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XP3KeggNOG:KOG0271EMBL:AB009055EMBL:AK227330EMBL:BT004562EMBL:CP002688EnsemblPlants:AT5G52820
EnsemblPlants:AT5G52820.1entrez:835359Gene3D:2.130.10.10GeneID:835359Genevisible:Q9FLX9GO:GO:0005730GO:GO:0009553
GO:GO:0080008Gramene:AT5G52820.1hmmpanther:PTHR19848hmmpanther:PTHR19848:SF0HOGENOM:HOG000091641InParanoid:Q9FLX9InterPro:IPR001632
InterPro:IPR001680InterPro:IPR012972InterPro:IPR015943InterPro:IPR017986InterPro:IPR019775InterPro:IPR020472KEGG:ath:AT5G52820
KO:K14855OMA:HINCLAWPaxDb:Q9FLX9Pfam:PF00400Pfam:PF08154Pfam:Q9FLX9Pfscan:PS50082
Pfscan:PS50294PhylomeDB:Q9FLX9PRIDE:Q9FLX9PRINTS:PR00319PRINTS:PR00320PRO:PR:Q9FLX9PROSITE:PS00678
PROSITE:PS50082PROSITE:PS50294ProteinModelPortal:Q9FLX9Proteomes:UP000006548RefSeq:NP_200094.1scanprosite:PS00678SMART:SM00320
SMR:Q9FLX9STRING:3702.AT5G52820.1SUPFAM:SSF50978TAIR:AT5G52820UniGene:At.29592UniProt:Q9FLX9
Coordinates (TAIR10) chr5:+:21401423..21404203
Molecular Weight (calculated) 52900.20 Da
IEP (calculated) 8.53
GRAVY (calculated) -0.38
Length 473 amino acids
Sequence (TAIR10)
(BLAST)
001: MTMMDTDEGK TVMCLLTDPE GTHLGSAMYI PQKAGPLQLT QLVNRFLDNE EMLPYSFYVS DEELLVPVGT YLEKNKVSVE KVLTIVYQQQ AVFRIRPVNR
101: CSQTIAGHAE AVLCVSFSPD GKQLASGSGD TTVRLWDLYT ETPLFTCKGH KNWVLTVAWS PDGKHLVSGS KSGEICCWNP KKGELEGSPL TGHKKWITGI
201: SWEPVHLSSP CRRFVTSSKD GDARIWDITL KKSIICLSGH TLAVTCVKWG GDGIIYTGSQ DCTIKMWETT QGKLIRELKG HGHWINSLAL STEYVLRTGA
301: FDHTGRQYPP NEEKQKALER YNKTKGDSPE RLVSGSDDFT MFLWEPSVSK QPKKRLTGHQ QLVNHVYFSP DGKWIASASF DKSVRLWNGI TGQFVTVFRG
401: HVGPVYQVSW SADSRLLLSG SKDSTLKIWE IRTKKLKQDL PGHADEVFAV DWSPDGEKVV SGGKDRVLKL WKG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)