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AT5G52810.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NAD(P)-binding Rossmann-fold superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: structural constituent of eye lens, binding, catalytic activity; INVOLVED IN: arginine catabolic process to glutamate, nopaline catabolic process, metabolic process, octopine catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Ornithine cyclodeaminase/mu-crystallin (InterPro:IPR003462); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG2423eggNOG:KOG3007EMBL:AB009055EMBL:BT020531EMBL:BT021995EMBL:CP002688EnsemblPlants:AT5G52810
EnsemblPlants:AT5G52810.1entrez:835358Gene3D:3.30.1780.10Gene3D:3.40.50.720GeneID:835358GO:GO:0009507Gramene:AT5G52810.1
hmmpanther:PTHR13812hmmpanther:PTHR13812:SF19InterPro:IPR003462InterPro:IPR016040InterPro:IPR023401KEGG:ath:AT5G52810OMA:QRNLVNM
Pfam:PF02423PhylomeDB:Q9FLY0PIRSF:PIRSF001439Proteomes:UP000006548Reactome:R-ATH-71064RefSeq:NP_200093.1SMR:Q9FLY0
STRING:3702.AT5G52810.1SUPFAM:SSF51735TAIR:AT5G52810UniGene:At.51090UniGene:At.74433UniGene:At.8892UniProt:Q9FLY0
Coordinates (TAIR10) chr5:+:21399524..21400501
Molecular Weight (calculated) 35225.10 Da
IEP (calculated) 6.79
GRAVY (calculated) -0.09
Length 325 amino acids
Sequence (TAIR10)
(BLAST)
001: MAALPVFIPA ESFPSILSHE TLINHFRTNL PKHSSTITSP VRQNYTVSSP SSLLLMPSWS SSSSLPYMGV KLVTYFPHNS SQNLPGIHGS YTLFSSTTGQ
101: TLATMDGTVL TLYRTSSVSG LGSKILARDD SQVLIMVGSG ALAPHLIKSH LAAKPSLRRV IIWNRTPQRA QELAETLSKD PQHKEISFDS HDSLDQIIPL
201: GDIISCATNS TVPLVKGEFL KPGTHLDLVG SFSHEMKECD DNAIQRGSVF VDNDTAMIEA GELAGAFERG VIKREDICGN LVELIKGDKE GRKSSTDITV
301: FKSVGSGTVD LLTAQLVHET YLSRC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)