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AT5G52760.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.393
golgi 0.221
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Copper transport protein family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Copper transport protein family; BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT5G52750.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J84UeggNOG:ENOG4111AW0EMBL:AB025606EMBL:AK229625EMBL:BT006168EMBL:BT008537EMBL:CP002688
EnsemblPlants:AT5G52760EnsemblPlants:AT5G52760.1entrez:835353GeneID:835353Gramene:AT5G52760.1hmmpanther:PTHR22814hmmpanther:PTHR22814:SF129
HOGENOM:HOG000237719KEGG:ath:AT5G52760OMA:DEPNCVIPhylomeDB:Q9LTE1Proteomes:UP000006548RefSeq:NP_200088.1SMR:Q9LTE1
STRING:3702.AT5G52760.1TAIR:AT5G52760UniGene:At.29597UniProt:Q9LTE1
Coordinates (TAIR10) chr5:+:21386919..21387540
Molecular Weight (calculated) 14079.10 Da
IEP (calculated) 8.79
GRAVY (calculated) -0.27
Length 126 amino acids
Sequence (TAIR10)
(BLAST)
001: MTAKNAVLQL SIHEERTRKK ALVTVSRFSG VTSITMDKSG KMTIVGEVDV PAVVMKLRKL CNTEIVSVDD VKPPVKKPEP EKPAESIAYP VPMNYAYQFN
101: PAYANSYYHQ PYGNCRVVDE PNCVIM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)