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AT5G52750.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.502
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Heavy metal transport/detoxification superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Heavy metal transport/detoxification superfamily protein ; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: Copper transport protein family (TAIR:AT5G52760.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J84UeggNOG:ENOG4111AW0EMBL:AB025606EMBL:AF083736EMBL:AK117134EMBL:BT003668EMBL:BT025501
EMBL:CP002688EnsemblPlants:AT5G52750EnsemblPlants:AT5G52750.1entrez:835352GeneID:835352Gramene:AT5G52750.1hmmpanther:PTHR22814
hmmpanther:PTHR22814:SF129HOGENOM:HOG000237719IntAct:Q9LTE2KEGG:ath:AT5G52750OMA:DESNCVIPhylomeDB:Q9LTE2Proteomes:UP000006548
RefSeq:NP_200087.1SMR:Q9LTE2STRING:3702.AT5G52750.1TAIR:AT5G52750UniGene:At.43541UniProt:Q9LTE2
Coordinates (TAIR10) chr5:+:21384134..21384795
Molecular Weight (calculated) 15484.00 Da
IEP (calculated) 9.11
GRAVY (calculated) -0.35
Length 139 amino acids
Sequence (TAIR10)
(BLAST)
001: MPPMKAVLQL SIHEERIRKK AFVTVSRCPG VTSITMDDKT GKMTVVGEVD VPVIVMKLRK LCNTELVSVE VVKPPEKKPE PEKPAPPKPA PAPAKPAEIV
101: AWPVQMNNPY QYNPAYANSY YQPYGNSRFV TDESNCVIM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)