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AT5G52650.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31541795 (2020): plasma membrane
  • PMID:31520498 (2020): mitochondrion
  • PMID:30961429 (2019): nucleus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25641898 (2015): plasma membrane
  • PMID:24030099 (2013): plasma membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22550958 (2012): plastid
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:17934214 (2008): cytosol
  • PMID:15734919 (2005): cytosol cytosolic ribosomes
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RNA binding Plectin/S10 domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA binding Plectin/S10 domain-containing protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, cell wall, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Plectin/S10, N-terminal (InterPro:IPR005326); BEST Arabidopsis thaliana protein match is: RNA binding Plectin/S10 domain-containing protein (TAIR:AT4G25740.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:20587eggNOG:COG5045eggNOG:KOG3344EMBL:AB025606
EMBL:AY065217EMBL:AY088678EMBL:AY122932EMBL:CP002688
EnsemblPlants:AT5G52650EnsemblPlants:AT5G52650.1entrez:835342GeneID:835342
Genevisible:Q9LTF2GO:GO:0005618GO:GO:0016020GO:GO:0022626
GO:GO:0022627Gramene:AT5G52650.1hmmpanther:PTHR12146hmmpanther:PTHR12146:SF7
HOGENOM:HOG000216624InParanoid:Q9LTF2IntAct:Q9LTF2InterPro:IPR005326
KEGG:ath:AT5G52650KO:K02947OMA:AQKDFNLPaxDb:Q9LTF2
Pfam:PF03501Pfam:Q9LTF2PhylomeDB:Q9LTF2PRIDE:Q9LTF2
PRO:PR:Q9LTF2ProteinModelPortal:Q9LTF2Proteomes:UP000006548Reactome:R-ATH-156827
Reactome:R-ATH-1799339Reactome:R-ATH-72689Reactome:R-ATH-72695Reactome:R-ATH-72702
Reactome:R-ATH-72706Reactome:R-ATH-975956Reactome:R-ATH-975957RefSeq:NP_200077.1
SMR:Q9LTF2STRING:3702.AT5G52650.1TAIR:AT5G52650UniGene:At.28644
UniProt:Q9LTF2
Coordinates (TAIR10) chr5:-:21355781..21357003
Molecular Weight (calculated) 19552.20 Da
IEP (calculated) 10.08
GRAVY (calculated) -0.63
Length 179 amino acids
Sequence (TAIR10)
(BLAST)
001: MIISEANRKE ICKYLFKEGV CFAKKDFNLA KHPLIDVPNL QVIKLMQSFK SKEYVRETFA WMHYYWFLTN EGIEFLRTYL NLPSDVVPAT LKKSAKPGGR
101: PFGGPPGDRS RGPRHEGGDR PRFGDRDGYR AGPRAGGEFG GEKGGAPADY QPSFQGSGRG FGRGAGGYSA AAPSGSGLP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)