AT5G52630.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 ASURE: mitochondrion What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : mitochondrial RNAediting factor 1 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a member of the DYW subfamily of pentatricopeptide repeat (PPR) proteins. Loss of MEF1 function affects RNA editing at specific sites in the mitochondrial genome but do not exhibit obvious phenotypes. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
mitochondrial RNAediting factor 1 (MEF1); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G04780.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:21350375..21352141 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 66153.30 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.63 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.22 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 588 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MALNSSAFFV PCHNYNQICD LLLSSARTRS TIKGLQLHGY VVKSGLSLIP LVANNLINFY SKSQLPFDSR RAFEDSPQKS STTWSSIISC FAQNELPWMS 101: LEFLKKMMAG NLRPDDHVLP SATKSCAILS RCDIGRSVHC LSMKTGYDAD VFVGSSLVDM YAKCGEIVYA RKMFDEMPQR NVVTWSGMMY GYAQMGENEE 201: ALWLFKEALF ENLAVNDYSF SSVISVCANS TLLELGRQIH GLSIKSSFDS SSFVGSSLVS LYSKCGVPEG AYQVFNEVPV KNLGIWNAML KAYAQHSHTQ 301: KVIELFKRMK LSGMKPNFIT FLNVLNACSH AGLVDEGRYY FDQMKESRIE PTDKHYASLV DMLGRAGRLQ EALEVITNMP IDPTESVWGA LLTSCTVHKN 401: TELAAFAADK VFELGPVSSG MHISLSNAYA ADGRFEDAAK ARKLLRDRGE KKETGLSWVE ERNKVHTFAA GERRHEKSKE IYEKLAELGE EMEKAGYIAD 501: TSYVLREVDG DEKNQTIRYH SERLAIAFGL ITFPADRPIR VMKNLRVCGD CHNAIKFMSV CTRRVIIVRD NNRFHRFEDG KCSCNDYW |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)