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AT5G52580.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.996
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RabGAP/TBC domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RabGAP/TBC domain-containing protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195), Protein of unknown function DUF3548 (InterPro:IPR021935); BEST Arabidopsis thaliana protein match is: Ypt/Rab-GAP domain of gyp1p superfamily protein (TAIR:AT4G28550.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5210eggNOG:KOG2197EMBL:CP002688EnsemblPlants:AT5G52580EnsemblPlants:AT5G52580.1entrez:835335ExpressionAtlas:F4KG92
GeneID:835335GO:GO:0016021Gramene:AT5G52580.1hmmpanther:PTHR22957hmmpanther:PTHR22957:SF34InterPro:IPR000195InterPro:IPR021935
PaxDb:F4KG92Pfam:PF00566Pfam:PF12068Pfscan:PS50086PRIDE:F4KG92PROSITE:PS50086ProteinModelPortal:F4KG92
Proteomes:UP000006548RefSeq:NP_200071.2SMART:SM00164SMR:F4KG92STRING:3702.AT5G52580.2SUPFAM:SSF47923TAIR:AT5G52580
TMHMM:TMhelixUniGene:At.42993UniProt:F4KG92
Coordinates (TAIR10) chr5:+:21338052..21342848
Molecular Weight (calculated) 77674.60 Da
IEP (calculated) 5.35
GRAVY (calculated) -0.49
Length 673 amino acids
Sequence (TAIR10)
(BLAST)
001: MSMEATELQD LSDDADYAAS QQQGSASMMR SDSGKRSLQS EHEDAVLIYL KDNVAIHPTQ FASERISGRL KLTKQDSVLF LSWIPYKGQT SNAKLSEKDR
101: SLYTITAVPF TEVRSIRRHT PALGWQYVIV VLSSGLAFPP LYFYNGGVRE FLAMVKQHVF LARSSEDQNV FIVNDFQSPL QRTLSSLELP SSLPVASGQS
201: VYPLDGGSSS ENQRRTSSDV GNRVSSVSQS GFRKQKSHDP TRDLSIHLLE KFSLVTKFAR DTTTQLFSEN NGFGSIDKRW NNQPVHSYPE KLSNIAEEKH
301: HEIRHSYSEN DLLKDDEISY IDVPADPLEF DKLSLMWGKP RQPPMGHKEF TALLDSEGRV VESKALRERV FYGGIEHQLR REVWPFLLGY YAYDSTYAER
401: EYLRSVKRME YATLKQQWQS ISPEQAKRFT KYRERKGLID KDVVRTDRAF EYYEGDDNLH VNSMRDILLT YSFYNFDLGY CQGMSDYLSP ILFVMEDESE
501: SFWCFVALME RLGPNFNRDQ NGMHTQLFAL SKLVELLDSP LHNYFKENDC LNYFFCFRWI LIQFKREFEY EKTMQLWEVM WTHYLSEHFH LYVCVAVLKR
601: CRSKIMGEQM DFDTLLKFIN ELSGHIDLDS TVRDAEALCI EAGENGAASI PPGTPPSLPL DDGTLYPQED DVL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)