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AT5G52570.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : beta-carotene hydroxylase 2
Curator
Summary (TAIR10)
Converts β-carotene to zeaxanthin via cryptoxanthin.
Computational
Description (TAIR10)
beta-carotene hydroxylase 2 (BETA-OHASE 2); FUNCTIONS IN: carotene beta-ring hydroxylase activity; INVOLVED IN: xanthophyll biosynthetic process, carotene metabolic process; LOCATED IN: endoplasmic reticulum, chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694); BEST Arabidopsis thaliana protein match is: beta-hydroxylase 1 (TAIR:AT4G25700.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G52570-MONOMERBioCyc:MetaCyc:AT5G52570-MONOMERBioGrid:20579BRENDA:1.14.13.129EC:1.14.13.129eggNOG:ENOG410IK78eggNOG:ENOG4111G77
EMBL:AB025606EMBL:AY074394EMBL:AY117225EMBL:CP002688EnsemblPlants:AT5G52570EnsemblPlants:AT5G52570.1entrez:835334
GeneID:835334Genevisible:Q9LTG0GO:GO:0005506GO:GO:0006633GO:GO:0016021GO:GO:0016123GO:GO:0016491
GO:GO:0016787GO:GO:0031969gramene_pathway:1.14.99.-gramene_pathway:PWY-5944gramene_pathway:PWY-5947hmmpanther:PTHR31899hmmpanther:PTHR31899:SF1
HOGENOM:HOG000032289InParanoid:Q9LTG0InterPro:IPR006694KEGG:ath:AT5G52570KO:K15746OMA:AMELWARPaxDb:Q9LTG0
Pfam:PF04116Pfam:Q9LTG0PhylomeDB:Q9LTG0PRIDE:Q9LTG0PRO:PR:Q9LTG0Proteomes:UP000006548RefSeq:NP_001119420.1
RefSeq:NP_200070.1STRING:3702.AT5G52570.1TAIR:AT5G52570tair10-symbols:B2tair10-symbols:BCH2tair10-symbols:BETA-OHASE 2tair10-symbols:CHY2
TMHMM:TMhelixUniGene:At.19016UniGene:At.49163UniProt:Q9LTG0
Coordinates (TAIR10) chr5:-:21334911..21336887
Molecular Weight (calculated) 33779.10 Da
IEP (calculated) 10.10
GRAVY (calculated) -0.06
Length 303 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAGLSTIAV TLKPLNRSSF SANHPISTAV FPPSLRFNGF RRRKILTVCF VVEERKQSSP MDDDNKPEST TSSSEILMTS RLLKKAEKKK SERFTYLIAA
101: VMSSFGITSM AIMAVYYRFS WQMKGGEVSV LEMFGTFALS VGAAVGMEFW ARWAHRALWH DSLWNMHESH HKPREGAFEL NDVFAITNAV PAIGLLYYGF
201: LNKGLVPGLC FGAGLGITMF GMAYMFVHDG LVHKRFPVGP IANVPYLRKV AAAHQLHHTD KFKGVPYGLF LGPKEVEEVG GKEELEKEIS RRIKLYNKGS
301: STS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)