suba logo
AT5G52540.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24872594 (2014): plastid plastid envelope plastid inner membrane
  • PMID:23851315 (2013): plastid
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:12766230 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF819)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF819); LOCATED IN: chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF819 (InterPro:IPR008537); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF819) (TAIR:AT5G24000.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5505eggNOG:ENOG410IH6GEMBL:AB025606EMBL:AY062547EMBL:BT000759EMBL:BT001227EMBL:CP002688
EnsemblPlants:AT5G52540EnsemblPlants:AT5G52540.1entrez:835330GeneID:835330GO:GO:0009941GO:GO:0016021Gramene:AT5G52540.1
hmmpanther:PTHR34289hmmpanther:PTHR34289:SF3HOGENOM:HOG000220761InterPro:IPR008537KEGG:ath:AT5G52540OMA:NDEWGTWPfam:PF05684
PhylomeDB:Q9LTG3Proteomes:UP000006548RefSeq:NP_200067.1STRING:3702.AT5G52540.1TAIR:AT5G52540TMHMM:TMhelixUniGene:At.27484
UniGene:At.45864UniProt:Q9LTG3
Coordinates (TAIR10) chr5:-:21321672..21323702
Molecular Weight (calculated) 47647.90 Da
IEP (calculated) 10.55
GRAVY (calculated) 0.76
Length 461 amino acids
Sequence (TAIR10)
(BLAST)
001: MATSLPLLNV IGNSLPSSSR LFRRRSYIVS RQDLPEFSAK STSSRLSFSP ASLSQFRNGT DRFLSPESSS PIRSVTVSSL STPLISPNDE WGTWTALFAT
101: GALGLWSEKT KVGAAMSGAL VSTLVGLAAS NLGIISSQAP AFAVVLNFLL PLAVPLLLFR ADLRRVVQST GKLLLAFLIG SVATTVGTAL AYYLVPMKSL
201: GPDSWKIAAA LMGRHIGGAV NYVAISNALG VTPSVLAAGL AADNVICAVY FTTLFALGSK IPAEAVPPPT TIVDAETNEA SETKNKIPVL LIATGIAVSL
301: AICKAGALLT KYFGISGGSL PAITAVVVIL ATVFPSQFGR LAPSGEAMAL ILMQVFFTVV GASGNIWSVI NTAPSIFLFA LVQIGTHLAV ILGIGKLLNI
401: ELRLLLLASN ANVGGPTTAA GMATAKGWNS LIVPGILAGI FGIAIATFIG IAFGVKVLKF M
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)