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AT5G52450.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:17151019 (2007): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : MATE efflux family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: response to nematode; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: MATE family transporter related protein (InterPro:IPR015521), Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT2G34360.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0534eggNOG:KOG1347EMBL:AB019226EMBL:AY046054
EMBL:AY079316EMBL:CP002688EnsemblPlants:AT5G52450EnsemblPlants:AT5G52450.1
entrez:835321GeneID:835321Genevisible:Q9FHB6GO:GO:0005774
GO:GO:0009624GO:GO:0015238GO:GO:0015297GO:GO:0016021
Gramene:AT5G52450.1hmmpanther:PTHR11206hmmpanther:PTHR11206:SF173HOGENOM:HOG000177026
InParanoid:Q9FHB6InterPro:IPR002528iPTMnet:Q9FHB6KEGG:ath:AT5G52450
KO:K03327OMA:DARIPAMPaxDb:Q9FHB6Pfam:PF01554
PhylomeDB:Q9FHB6PRIDE:Q9FHB6ProteinModelPortal:Q9FHB6Proteomes:UP000006548
RefSeq:NP_200058.1SMR:Q9FHB6STRING:3702.AT5G52450.1TAIR:AT5G52450
TIGRfam:TIGR00797TIGRFAMs:TIGR00797TMHMM:TMhelixUniGene:At.22618
UniGene:At.63900UniProt:Q9FHB6
Coordinates (TAIR10) chr5:-:21289042..21291749
Molecular Weight (calculated) 52476.00 Da
IEP (calculated) 8.11
GRAVY (calculated) 0.74
Length 486 amino acids
Sequence (TAIR10)
(BLAST)
001: MRDDRERGEG DLSWPLIGEK SSVKEEVKKQ LWLSGPLIAV SLLQFCLQVI SVMFVGHLGS LPLSAASIAT SFASVTGFSF LMGTASALDT LCGQAYGAKK
101: YGMLGIQMQR AMFVLTLASI PLSIIWANTE HLLVFFGQNK SIATLAGSYA KFMIPSIFAY GLLQCFNRFL QAQNNVFPVV FCSGVTTSLH VLLCWVLVFK
201: SGLGFQGAAL ANSISYWLNV VLLFCYVKFS PSCSLTWTGF SKEALRDILP FLRLAVPSAL MVCLEMWSFE LLVLLSGLLP NPVLETSVLS ICLNTSGTMW
301: MIPFGLSGAA STRISNELGA GNPKVAKLAV RVVICIAVAE SIVIGSVLIL IRNIWGLAYS SELEVVSYVA SMMPILALGN FLDSLQCVLS GVARGCGWQK
401: IGAIINLGSY YLVGVPSGLL LAFHFHVGGR GLWLGIICAL VVQVFGLGLV TIFTNWDEEA KKATNRIESS SSVKDFAVDD RSVVVF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)