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AT5G52420.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25641898 (2015): plasma membrane
  • PMID:23990937 (2013): plasma membrane
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:16618929 (2006): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23920.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410ITC1eggNOG:ENOG410YIUIEMBL:AB019226EMBL:CP002688EnsemblPlants:AT5G52420EnsemblPlants:AT5G52420.1entrez:835318
GeneID:835318GO:GO:0005783GO:GO:0016021Gramene:AT5G52420.1hmmpanther:PTHR33829hmmpanther:PTHR33829:SF1KEGG:ath:AT5G52420
OMA:ANLAYWGPhylomeDB:Q9FHB8Proteomes:UP000006548RefSeq:NP_568771.1STRING:3702.AT5G52420.1TAIR:AT5G52420TMHMM:TMhelix
UniGene:At.69935UniGene:At.8914UniProt:Q9FHB8
Coordinates (TAIR10) chr5:+:21281817..21282545
Molecular Weight (calculated) 26738.50 Da
IEP (calculated) 6.80
GRAVY (calculated) 0.36
Length 242 amino acids
Sequence (TAIR10)
(BLAST)
001: MSGGVGPTYN DITLPKEEEE EHQTQSTSTV SSTGKPAGFF SFRQLNILAI IIVLSASGLV TIQDFIFTIL TLIYFFFLSK LIFPPHNNPN RDAPLTSSTN
101: KIFRIYVTAA GIVGLIIPIC YIFEGIVEDD KNGVSAAAPH VFLLASQIFM EGLATMFGFS APARILVPIV YNARRVLTLV EWIMSEFSRE DVTGTVSARR
201: MYAGKVLAAA NLGIWSFNLF GVLIPVYLPR AFKRYYGSDK ED
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)