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AT5G52390.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : PAR1 protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
PAR1 protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: PAR1 (InterPro:IPR009489); BEST Arabidopsis thaliana protein match is: PAR1 protein (TAIR:AT3G54040.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IWBEeggNOG:ENOG410YH1NEMBL:AB019226EMBL:AY091116
EMBL:AY122980EMBL:CP002688EnsemblPlants:AT5G52390EnsemblPlants:AT5G52390.1
entrez:835315GeneID:835315Gramene:AT5G52390.1hmmpanther:PTHR33649
hmmpanther:PTHR33649:SF2InterPro:IPR009489KEGG:ath:AT5G52390OMA:CEAQGAN
Pfam:PF06521PhylomeDB:Q9FHC1Proteomes:UP000006548RefSeq:NP_200052.1
STRING:3702.AT5G52390.1TAIR:AT5G52390UniGene:At.29617UniProt:Q9FHC1
Coordinates (TAIR10) chr5:-:21264281..21265173
Molecular Weight (calculated) 21157.60 Da
IEP (calculated) 4.74
GRAVY (calculated) 0.01
Length 195 amino acids
Sequence (TAIR10)
(BLAST)
001: MALKTVFVAF MILLAIYSQT TFGDDVKCEN LDENTCAFAV SSTGKRCVLE KSMKRSGIEV YTCRSSEIEA NKVTNIIESD ECIKACGLDR KALGISSDAL
101: LESQFTHKLC SVKCLNQCPN VVDLYFNLAA GEGVYLPKLC ESQEGKSRRA MSEIRSSGIA MDTLAPVGPV MLGEIAPEPA TSMDNMPYVP APSPY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)