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AT5G52310.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : low-temperature-responsive protein 78 (LTI78) / desiccation-responsive protein 29A (RD29A)
Curator
Summary (TAIR10)
cold regulated gene, the 5' region of cor78 has cis-acting regulatory elements that can impart cold-regulated gene expression
Computational
Description (TAIR10)
LOW-TEMPERATURE-INDUCED 78 (LTI78); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: in 7 processes; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: CAP160 protein (TAIR:AT5G52300.2); Has 4951 Blast hits to 3145 proteins in 397 species: Archae - 10; Bacteria - 1464; Metazoa - 1621; Fungi - 447; Plants - 293; Viruses - 46; Other Eukaryotes - 1070 (source: NCBI BLink).
Protein Annotations
EMBL:AB019226EMBL:CP002688EMBL:D13044EMBL:L22567EMBL:X57600EMBL:X67671EnsemblPlants:AT5G52310
EnsemblPlants:AT5G52310.1entrez:835307GeneID:835307Genevisible:Q06738GO:GO:0006970GO:GO:0009409GO:GO:0009414
GO:GO:0009651GO:GO:0009737GO:GO:0010150GO:GO:0042538Gramene:AT5G52310.1hmmpanther:PTHR33836hmmpanther:PTHR33836:SF1
HOGENOM:HOG000113405InParanoid:Q06738iPTMnet:Q06738KEGG:ath:AT5G52310ncoils:CoilOMA:FPMRSHTPaxDb:Q06738
Pfam:Q06738PhylomeDB:Q06738PIR:S30154PRIDE:Q06738PRO:PR:Q06738ProteinModelPortal:Q06738Proteomes:UP000006548
RefSeq:NP_200044.1STRING:3702.AT5G52310.1TAIR:AT5G52310tair10-symbols:COR78tair10-symbols:LTI140tair10-symbols:LTI78tair10-symbols:RD29A
UniGene:At.25417UniGene:At.75602UniProt:Q06738
Coordinates (TAIR10) chr5:+:21240929..21243326
Molecular Weight (calculated) 77859.60 Da
IEP (calculated) 4.17
GRAVY (calculated) -1.09
Length 710 amino acids
Sequence (TAIR10)
(BLAST)
001: MDQTEEPPLN THQQHPEEVE HHENGATKMF RKVKARAKKF KNSLTKHGQS NEHEQDHDLV EEDDDDDELE PEVIDAPGVT GKPRETNVPA SEEIIPPGTK
101: VFPVVSSDYT KPTESVPVQE ASYGHDAPAH SVRTTFTSDK EEKRDVPIHH PLSELSDREE SRETHHESLN TPVSLLSGTE DVTSTFAPSG DDEYLDGQRK
201: VNVETPITLE EESAVSDYLS GVSNYQSKVT DPTKEETGGV PEIAESFGNM EVTDESPDQK PGQFERDLST RSKEFKEFDQ DFDSVLGKDS PAKFPGESGV
301: VFPVGFGDES GAELEKDFPT RSHDFDMKTE TGMDTNSPSR SHEFDLKTES GNDKNSPMGF GSESGAELEK EFDQKNDSGR NEYSPESDGG LGAPLGGNFP
401: VRSHELDLKN ESDIDKDVPT GFDGEPDFLA KGRPGYGEAS EEDKFPARSD DVEVETELGR DPKTETLDQF SPELSHPKER DEFKESRDDF EETRDEKTEE
501: PKQSTYTEKF ASMLGYSGEI PVGDQTQVAG TVDEKLTPVN EKDQETESAV TTKLPISGGG SGVEEQRGED KSVSGRDYVA EKLTTEEEDK AFSDMVAEKL
601: QIGGEEEKKE TTTKEVEKIS TEKAASEEGE AVEEEVKGGG GMVGRIKGWF GGGATDEVKP ESPHSVEEAP KSSGWFGGGA TEEVKPKSPH SVEESPQSLG
701: STVVPVQKEL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)