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AT5G52240.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25641898 (2015): plasma membrane
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:22430844 (2012): Golgi
  • PMID:22215637 (2012): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:17644812 (2007): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:16618929 (2006): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : membrane steroid binding protein 1
Curator
Summary (TAIR10)
Encodes a protein with similarity to progesterone-binding proteins in animals. Has been shown to bind steroids in vitro. Expressed in aerial portions of the plant excluding mature flowers and siliques. Antisense experiments suggest a role in inhibition of hypocotyl cell elongation. Expression is suppressed light grown seedlings transferred to the dark.
Computational
Description (TAIR10)
membrane steroid binding protein 1 (MSBP1); FUNCTIONS IN: steroid binding; INVOLVED IN: negative regulation of cell growth; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome b5 (InterPro:IPR001199); BEST Arabidopsis thaliana protein match is: membrane-associated progesterone binding protein 3 (TAIR:AT3G48890.1); Has 1072 Blast hits to 1062 proteins in 198 species: Archae - 0; Bacteria - 0; Metazoa - 430; Fungi - 335; Plants - 200; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink).
Protein Annotations
BioGrid:20545eggNOG:ENOG4111UG0eggNOG:KOG1110EMBL:AB025603EMBL:AF153284EMBL:AY086811EMBL:BT000922
EMBL:CP002688EnsemblPlants:AT5G52240EnsemblPlants:AT5G52240.1entrez:835300ExpressionAtlas:Q9XFM6Gene3D:3.10.120.10GeneID:835300
Genevisible:Q9XFM6GO:GO:0005496GO:GO:0005783GO:GO:0005794GO:GO:0005886GO:GO:0010008GO:GO:0016021
GO:GO:0020037GO:GO:0030308hmmpanther:PTHR10281hmmpanther:PTHR10281:SF45HOGENOM:HOG000187840InParanoid:Q9XFM6IntAct:Q9XFM6
InterPro:IPR001199iPTMnet:Q9XFM6OMA:WFASPFDPaxDb:Q9XFM6Pfam:PF00173Pfam:Q9XFM6PhylomeDB:Q9XFM6
PRIDE:Q9XFM6PRO:PR:Q9XFM6ProteinModelPortal:Q9XFM6Proteomes:UP000006548RefSeq:NP_200037.1SMART:SM01117SMR:Q9XFM6
STRING:3702.AT5G52240.1SUPFAM:SSF55856TAIR:AT5G52240tair10-symbols:AtMAPR5tair10-symbols:ATMP1tair10-symbols:MSBP1TMHMM:TMhelix
UniGene:At.21163UniProt:Q9XFM6
Coordinates (TAIR10) chr5:+:21213121..21214557
Molecular Weight (calculated) 24406.70 Da
IEP (calculated) 4.37
GRAVY (calculated) -0.38
Length 220 amino acids
Sequence (TAIR10)
(BLAST)
001: MALELWQTLK EAIHAYTGLS PVVFFTALAL AFAIYQVISG WFASPFDDVN RHQRARSLAQ EEEPPIPQPV QVGEITEEEL KQYDGSDPQK PLLMAIKHQI
101: YDVTQSRMFY GPGGPYALFA GKDASRALAK MSFEEKDLTW DVSGLGPFEL DALQDWEYKF MSKYAKVGTV KVAGSEPETA SVSEPTENVE QDAHVTTTPG
201: KTVVDKSDDA PAETVLKKEE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)