AT5G52230.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : methyl-CPG-binding domain protein 13 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
methyl-CPG-binding domain protein 13 (MBD13); FUNCTIONS IN: methyl-CpG binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Methyl-CpG DNA binding (InterPro:IPR001739); Has 6509 Blast hits to 4943 proteins in 596 species: Archae - 10; Bacteria - 822; Metazoa - 2790; Fungi - 554; Plants - 296; Viruses - 34; Other Eukaryotes - 2003 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:21208097..21211634 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 82660.60 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.94 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.91 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 746 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNGEGISDGL SAERKVEIRV RKNGRKDKVI VEKSAAQGLP EGWIKKLEIT NRSGRKTRRD PFFIDPKSEY IFQSFKDASR YVETGNIGHY ARKLKESDIE 101: DDDSGNGKTV LRLEYVDKRS ADDVLEKEKT IDDVRRSKRR NLSSSDEHSK NCKMTSDLSI VTSQVLEDLG KKEEVKDPIE KQLIAKRVTR SQTKASTTEE 201: VVVDLKRNLS SSNAKSEKDS VNSSVRSQKP KKEAVMKEEE EQDSSEKRIT RSKVEEKKNE LSNSVARRTS KRLAGIELEP TPELKTRAKV QRIVPLDDEP 301: TPELKTRTKV QRVVPPDDEP TPELKTRTKI QRIVPPDDEP TLELKTRTKV QRILPPDDEL TPELKSRTKV QRIVPPDDEL TPEFKTRTKV QQRIPPDDGR 401: AGKCKQPVNH VTTSGSKKTE IPLNKEVAQS CNEQSSQKPH AAAATSNNRV SADSAVGIQN IGKAVGRKPS KDKKTLKSPL IVYELNPVFH LDGYKQKEEM 501: SPVSPLSCQT SATKCEKTAA GKRVGRSSPK ANLTTSVKPT QISPLRSPNK GKQPHPSDSG SAIQRRNKLA NEYSNSSVVR GTCSEVMEKS TNSFSSAFDS 601: TLADLCKDPC IAFAIKTLTG ESLCLLNTPA ISSNPINNHT KQKGVSFTPE TPGNVNTCSE KLVFPSPPPG ANIWQDPCID FAIKTLTGAI PIGLDEPDTK 701: SKSQGMTSTT AATQEAKGRQ NNCDYMTNKT VGKPDDLRFT QSFSKD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)