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AT5G52130.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.997
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 10 Blast hits to 10 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EMBL:AB025603EMBL:CP002688EnsemblPlants:AT5G52130EnsemblPlants:AT5G52130.1
entrez:835289GeneID:835289Gramene:AT5G52130.1KEGG:ath:AT5G52130
Proteomes:UP000006548RefSeq:NP_200026.1TAIR:AT5G52130UniGene:At.55497
UniProt:Q9LTK7
Coordinates (TAIR10) chr5:-:21182468..21183875
Molecular Weight (calculated) 18878.00 Da
IEP (calculated) 4.48
GRAVY (calculated) -0.81
Length 163 amino acids
Sequence (TAIR10)
(BLAST)
001: MRVMMQSKQM EMDEAFAASL LYDDDQTDDQ AVAREWQNME NSLISLSDDE KFAKSLQEQE LNRSTSTQQQ SHVGSSSHDS SDDSTHSLPP DVNIDPDNMT
101: YEENRSEQST KDCRRGELAK YQLINLPRRL EREILYPKKL SKTIICMNSF KINIVISLQY FVL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)