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AT5G52110.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF2930)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
HIGH CHLOROPHYLL FLUORESCENCE 208 (HCF208); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2930 (InterPro:IPR021325); Has 125 Blast hits to 125 proteins in 55 species: Archae - 0; Bacteria - 72; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IHP8eggNOG:ENOG4111WI1EMBL:AB015478EMBL:AK175363EMBL:AK176564EMBL:BT029468EMBL:CP002688
EnsemblPlants:AT5G52110EnsemblPlants:AT5G52110.1EnsemblPlants:AT5G52110.2entrez:835287GeneID:835287Genevisible:Q9FJ81GO:GO:0009507
GO:GO:0009535GO:GO:0010190GO:GO:0016021Gramene:AT5G52110.1Gramene:AT5G52110.2hmmpanther:PTHR36403HOGENOM:HOG000071046
InParanoid:Q9FJ81InterPro:IPR021325KEGG:ath:AT5G52110OMA:LCVRGYWPaxDb:Q9FJ81Pfam:PF11152PhylomeDB:Q9FJ81
PRIDE:Q9FJ81PRO:PR:Q9FJ81Proteomes:UP000006548RefSeq:NP_001032060.1RefSeq:NP_200024.1STRING:3702.AT5G52110.1TAIR:AT5G52110
tair10-symbols:CCB2tair10-symbols:HCF208UniGene:At.29637UniProt:Q9FJ81
Coordinates (TAIR10) chr5:-:21172653..21173953
Molecular Weight (calculated) 30608.50 Da
IEP (calculated) 6.78
GRAVY (calculated) -0.11
Length 275 amino acids
Sequence (TAIR10)
(BLAST)
001: MSIQICNFPF HPKFALQPRA QRSTRIFART ENDSPQSKTS DQQLNLSVLR FTFGIPGFDE SYLPRWIGYG FGSLLLLNHF SASAPISESQ MRSEALGLSL
101: AAFSIALPYI GKFLKGSVVE QRSLPEEGEQ VFVISSNIGD SLKEDLAWAT YVLLRNTSTI AVLISVQGEL CVRGYWNCPD QMSKAQLHDW FKKKVDEIGL
201: ADVKETLYFP QYAGSALSLD ILPDGTRSLF VQPLVQNTNE PQKVNGFLLV ASTAGYAYSD KDRAWIGAMA EKFRG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)