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AT5G52100.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23851315 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Dihydrodipicolinate reductase, bacterial/plant
Curator
Summary (TAIR10)
Is essential for chloroplast NAD(P)H dehydrogenase activity, which is involved in electron transfer between PSII and PSI. Likely functions in biogenesis or stabilization of the NAD(P)H dehydrogenase complex.
Computational
Description (TAIR10)
chlororespiration reduction 1 (crr1); FUNCTIONS IN: dihydrodipicolinate reductase activity; INVOLVED IN: photosynthesis, light reaction, lysine biosynthetic process via diaminopimelate; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dihydrodipicolinate reductase, C-terminal (InterPro:IPR022663), NAD(P)-binding domain (InterPro:IPR016040), Dihydrodipicolinate reductase, bacterial/plant (InterPro:IPR011770), Dihydrodipicolinate reductase, N-terminal (InterPro:IPR000846); Has 2708 Blast hits to 2708 proteins in 1059 species: Archae - 78; Bacteria - 2168; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 417 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G52100-MONOMERBioGrid:20531eggNOG:COG0289eggNOG:ENOG410IK9W
EMBL:AB015478EMBL:AY084406EMBL:BT030092EMBL:CP002688
EnsemblPlants:AT5G52100EnsemblPlants:AT5G52100.1entrez:835286Gene3D:3.40.50.720
GeneID:835286Genevisible:Q9FJ82GO:GO:0008839GO:GO:0009089
GO:GO:0009507GO:GO:0009570GO:GO:0019684Gramene:AT5G52100.1
gramene_plant_reactome:1119273gramene_plant_reactome:1119419gramene_plant_reactome:6875406gramene_plant_reactome:6877385
hmmpanther:PTHR20836hmmpanther:PTHR20836:SF2HOGENOM:HOG000227154InParanoid:Q9FJ82
InterPro:IPR000846InterPro:IPR016040InterPro:IPR022663InterPro:IPR023940
KEGG:00261+1.17.1.8KEGG:00300+1.17.1.8KEGG:ath:AT5G52100KO:K16908
OMA:KMGREVIPANTHER:PTHR20836PaxDb:Q9FJ82Pfam:PF01113
Pfam:PF05173Pfam:Q9FJ82PhylomeDB:Q9FJ82PIRSF:PIRSF000161
PRIDE:Q9FJ82PRO:PR:Q9FJ82ProteinModelPortal:Q9FJ82Proteomes:UP000006548
RefSeq:NP_200023.1SMR:Q9FJ82STRING:3702.AT5G52100.1SUPFAM:SSF51735
SUPFAM:SSF55347TAIR:AT5G52100tair10-symbols:crr1TIGRfam:TIGR00036
TIGRFAMs:TIGR00036UniGene:At.29638unipathway:UPA00034UniProt:Q9FJ82
Coordinates (TAIR10) chr5:+:21170203..21172107
Molecular Weight (calculated) 32039.90 Da
IEP (calculated) 6.24
GRAVY (calculated) 0.17
Length 298 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAVNCHFFQ LSRHLKPSRP SFSCSASQPS QNNIKVIING AAKEIGRAAV VAVTKARGME LAGAVDNHFV GEDIGLLCDM EEPLEIPVVS DLTMVLGSIS
101: QGKEVGVVID FTDPSTVYEN VKQATAFGMK SVVYVPRIKP ETVSALSALC DKATMGCLVA PTLSIGSILL QQAVIMASFH YNNVELVESR PNAADLPSPE
201: AIQIANNISN LGQIYNREDS STDVQARGQV IGEDGVRVHS MVLPGLPSST QVYFSSPGDV YTVKHDIIDV RSLMPGLLLA IRKVVRLKNL VYGLEKFL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)