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AT5G52040.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22550958 (2012): plastid
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein
Curator
Summary (TAIR10)
encodes an arginine/serine-rich splicing factor. transcript is alternatively spliced and is differentially expressed in different tissues (flowers, roots, stems, and leaves) examined.
Computational
Description (TAIR10)
ATRSP41; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome, RNA splicing; LOCATED IN: spliceosomal complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: arginine/serine-rich splicing factor 35 (TAIR:AT4G25500.4); Has 506050 Blast hits to 500572 proteins in 22103 species: Archae - 10893; Bacteria - 305035; Metazoa - 98290; Fungi - 14007; Plants - 29495; Viruses - 35939; Other Eukaryotes - 12391 (source: NCBI BLink).
Protein Annotations
BioGrid:20524eggNOG:COG0724eggNOG:KOG0106EMBL:AB015478
EMBL:AF370171EMBL:AK319008EMBL:AY059133EMBL:CP002688
EMBL:X99436EnsemblPlants:AT5G52040EnsemblPlants:AT5G52040.1EnsemblPlants:AT5G52040.2
EnsemblPlants:AT5G52040.3EnsemblPlants:AT5G52040.4entrez:835279ExpressionAtlas:P92966
Gene3D:3.30.70.330GeneID:835279Genevisible:P92966GO:GO:0000166
GO:GO:0003723GO:GO:0005681GO:GO:0006397GO:GO:0008380
hmmpanther:PTHR24012HOGENOM:HOG000276234InParanoid:P92966IntAct:P92966
InterPro:IPR000504InterPro:IPR012677iPTMnet:P92966KEGG:ath:AT5G52040
KO:K12893OMA:PYEKRREPaxDb:P92966Pfam:P92966
Pfam:PF00076Pfscan:PS50102PhylomeDB:P92966PRIDE:P92966
PRO:PR:P92966PROSITE:PS50102ProteinModelPortal:P92966Proteomes:UP000006548
RefSeq:NP_001154773.1RefSeq:NP_001154774.1RefSeq:NP_200017.2RefSeq:NP_851174.1
SMART:SM00360SMR:P92966STRING:3702.AT5G52040.2SUPFAM:SSF54928
TAIR:AT5G52040tair10-symbols:At-RS41tair10-symbols:ATRSP41tair10-symbols:RS41
UniGene:At.22278UniProt:P92966
Coordinates (TAIR10) chr5:+:21131081..21133318
Molecular Weight (calculated) 41283.80 Da
IEP (calculated) 10.83
GRAVY (calculated) -1.49
Length 356 amino acids
Sequence (TAIR10)
(BLAST)
001: MKPVFCGNFE YDARESDLER LFRKYGKVER VDMKAGFAFV YMEDERDAED AIRALDRFEY GRTGRRLRVE WTKNDRGGAG RSGGSRRSSS GLRPSKTLFV
101: INFDAQNTRT RDLERHFEPY GKIVNVRIRR NFAFIQYEAQ EDATRALDAT NSSKLMDKVI SVEYAVKDDD SRGNGYSPER RRDRSPDRRR RSPSPYRRER
201: GSPDYGRGAS PVAHKRERTS PDYGRGRRSP SPYKRARLSP DYKRDDRRRE RVASPENGAV RNRSPRKGRG ESRSPPPYEK RRESRSPPPY EKRRESRSPP
301: PYEKRRERSR SRSKSSPENG QVESPGQIME VEAGRGYDGA DSPIRESPSR SPPAEE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)