AT5G51980.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.982 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Transducin/WD40 repeat-like superfamily protein | ||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), Zinc finger, CCCH-type (InterPro:IPR000571), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: zinc finger WD40 repeat protein 1 (TAIR:AT4G25440.1); Has 29363 Blast hits to 16060 proteins in 578 species: Archae - 38; Bacteria - 4405; Metazoa - 10853; Fungi - 6886; Plants - 3443; Viruses - 0; Other Eukaryotes - 3738 (source: NCBI BLink). | ||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:21113650..21115902 | ||||||||||||
| Molecular Weight (calculated) | 47290.10 Da | ||||||||||||
| IEP (calculated) | 7.53 | ||||||||||||
| GRAVY (calculated) | -0.23 | ||||||||||||
| Length | 437 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDFDLNGGNK RVFNRLGGGG GSTRPMAPTD TRQKVCFHWR AGRCNRSPCP YLHRELPGPG PGQGQGPGYT NKRVAEESGF AGPSHRRGPG FNGNSSSSWG 101: RFGGNRTVTK TEKVCNFWVD GNCTYGDKCR YLHCWSKGES FALLTQLDGH EKLVSGIALP SGSDKLYTGS KDETLRVWDC ASGQCTGVLK LGGEIGCVLS 201: EGPWLLVGMP NLVKAWNIET NADQSLSGPV GQVYSLVVGT DLLFAGTQDG SILAWRYNAA TNCFEPSASL TGHTLAVVTL YVGANRLYSG SMDKTIKVWS 301: LDNLQCIQTL TDHSSVVMSL ICWDQFLLSC SLDNTVKIWA AIEGGNLEVT YTHKEEHGVL ALCGVHDAEA KPVLLCACND NTLRLYDLPS FTERGKIFAK 401: QEIRAIQIGP GGIFFTGDGT GQVKVWKWCT EPTAALP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)