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AT5G51970.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25641898 (2015): plasma membrane
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:22215637 (2012): plasma membrane
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : GroES-like zinc-binding alcohol dehydrogenase family protein
Curator
Summary (TAIR10)
Encodes a putative sorbitol dehydrogenase that can be thiolated in vitro.
Computational
Description (TAIR10)
GroES-like zinc-binding alcohol dehydrogenase family protein; FUNCTIONS IN: oxidoreductase activity, zinc ion binding; INVOLVED IN: oxidation reduction; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, zinc-containing, conserved site (InterPro:IPR002328), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: GroES-like zinc-binding alcohol dehydrogenase family protein (TAIR:AT5G63620.1); Has 39885 Blast hits to 39871 proteins in 3071 species: Archae - 851; Bacteria - 26146; Metazoa - 1385; Fungi - 2785; Plants - 3263; Viruses - 3; Other Eukaryotes - 5452 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G51970-MONOMERBioCyc:ARA:GQT-2773-MONOMERBioGrid:20517EC:1.1.1.14eggNOG:COG1063eggNOG:KOG0024EMBL:AB015478
EMBL:AF370161EMBL:AK176901EMBL:AK230367EMBL:AK317559EMBL:AY085213EMBL:AY133848EMBL:CP002688
EnsemblPlants:AT5G51970EnsemblPlants:AT5G51970.1EnsemblPlants:AT5G51970.2entrez:835272Gene3D:3.40.50.720Gene3D:3.90.180.10GeneID:835272
Genevisible:Q9FJ95GO:GO:0003939GO:GO:0005737GO:GO:0005829GO:GO:0005886GO:GO:0008270GO:GO:0009506
GO:GO:0031966Gramene:AT5G51970.1Gramene:AT5G51970.2gramene_pathway:1.1.1.14gramene_pathway:PWY-4101hmmpanther:PTHR11695hmmpanther:PTHR11695:SF485
HOGENOM:HOG000294670InParanoid:Q9FJ95InterPro:IPR002085InterPro:IPR002328InterPro:IPR011032InterPro:IPR013149InterPro:IPR013154
InterPro:IPR016040InterPro:IPR020843KEGG:ath:AT5G51970KO:K00008OMA:KTMRCADPANTHER:PTHR11695PaxDb:Q9FJ95
Pfam:PF00107Pfam:PF08240Pfam:Q9FJ95PhylomeDB:Q9FJ95PRIDE:Q9FJ95PRO:PR:Q9FJ95PROSITE:PS00059
ProteinModelPortal:Q9FJ95Proteomes:UP000006548Reactome:R-ATH-5652227Reactome:R-ATH-5661270RefSeq:NP_200010.1RefSeq:NP_974925.1scanprosite:PS00059
SMART:SM00829SMR:Q9FJ95STRING:3702.AT5G51970.1SUPFAM:SSF50129SUPFAM:SSF51735TAIR:AT5G51970UniGene:At.29648
UniGene:At.9328UniProt:Q9FJ95
Coordinates (TAIR10) chr5:+:21111820..21113284
Molecular Weight (calculated) 39258.00 Da
IEP (calculated) 5.85
GRAVY (calculated) 0.14
Length 364 amino acids
Sequence (TAIR10)
(BLAST)
001: MGKGGMSQGE GSKVEEENMA AWLVGINTLK IQPFLLPSVG PHDVRVRMKA VGICGSDVHY LKTMRCADFV VKEPMVIGHE CAGIIEEVGE EVKHLVVGDR
101: VALEPGISCW RCNLCREGRY NLCPEMKFFA TPPVHGSLAN QVVHPADLCF KLPENVSLEE GAMCEPLSVG VHACRRAEVG PETNVLVMGA GPIGLVTMLA
201: ARAFSVPRIV IVDVDENRLA VAKQLGADEI VQVTTNLEDV GSEVEQIQKA MGSNIDVTFD CAGFNKTMST ALAATRCGGK VCLVGMGHGI MTVPLTPAAA
301: REVDVVGVFR YKNTWPLCLE FLTSGKIDVK PLITHRFGFS QKEVEDAFET SARGSNAIKV MFNL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)