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AT5G51940.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNA polymerase Rpb6
Curator
Summary (TAIR10)
One of two highly similar proteins that can serve as a non-catalytic subunit of nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB6 and the E. coli RNA polymerase omega subunit. Probably redundant with At2g04630.
Computational
Description (TAIR10)
NRPB6A; FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: transcription, DNA-dependent; LOCATED IN: DNA-directed RNA polymerase V complex, DNA-directed RNA polymerase II, core complex, DNA-directed RNA polymerase IV complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase, 14-18kDa subunit, conserved site (InterPro:IPR020708), RNA polymerase subunit, RPB6/omega (InterPro:IPR012293), RNA polymerase Rpb6 (InterPro:IPR006110), DNA-directed RNA polymerase, 14-18kDa subunit (InterPro:IPR006111); BEST Arabidopsis thaliana protein match is: RNA polymerase Rpb6 (TAIR:AT2G04630.1); Has 907 Blast hits to 906 proteins in 313 species: Archae - 223; Bacteria - 0; Metazoa - 99; Fungi - 194; Plants - 79; Viruses - 16; Other Eukaryotes - 296 (source: NCBI BLink).
Protein Annotations
BioGrid:20514eggNOG:COG1758eggNOG:KOG3405EMBL:AB015478EMBL:AF370301EMBL:AY063088EMBL:AY088602
EMBL:CP002688EnsemblPlants:AT5G51940EnsemblPlants:AT5G51940.1entrez:835269Gene3D:3.90.940.10GeneID:835269Genevisible:Q9FJ98
GO:GO:0000418GO:GO:0000419GO:GO:0003677GO:GO:0003899GO:GO:0005665GO:GO:0005666GO:GO:0005736
GO:GO:0006360GO:GO:0006366GO:GO:0006383Gramene:AT5G51940.1HAMAP:MF_00192hmmpanther:PTHR10773HOGENOM:HOG000225272
InParanoid:Q9FJ98InterPro:IPR006110InterPro:IPR006111InterPro:IPR012293InterPro:IPR020708InterPro:IPR028363KEGG:00230+2.7.7.6
KEGG:00240+2.7.7.6KEGG:ath:AT5G51940KO:K03014OMA:KTARPRNPANTHER:PTHR10773PaxDb:Q9FJ98Pfam:PF01192
Pfam:Q9FJ98PhylomeDB:Q9FJ98PIRSF:PIRSF000778PIRSF:PIRSF500154PRIDE:Q9FJ98PRO:PR:Q9FJ98PROSITE:PS01111
ProteinModelPortal:Q9FJ98Proteomes:UP000006548Reactome:R-ATH-112382Reactome:R-ATH-113418Reactome:R-ATH-1834949Reactome:R-ATH-674695Reactome:R-ATH-6781823
Reactome:R-ATH-6782135Reactome:R-ATH-6782210Reactome:R-ATH-72086Reactome:R-ATH-72163Reactome:R-ATH-72165Reactome:R-ATH-72203Reactome:R-ATH-73776
Reactome:R-ATH-73779Reactome:R-ATH-75953Reactome:R-ATH-76042Reactome:R-ATH-77075RefSeq:NP_200007.1scanprosite:PS01111SMART:SM01409
SMR:Q9FJ98STRING:3702.AT5G51940.1SUPFAM:SSF63562TAIR:AT5G51940tair10-symbols:NRPB6Atair10-symbols:NRPD6Atair10-symbols:NRPE6A
UniGene:At.19147UniGene:At.66742UniProt:Q9FJ98
Coordinates (TAIR10) chr5:+:21104679..21105796
Molecular Weight (calculated) 16653.30 Da
IEP (calculated) 3.93
GRAVY (calculated) -0.94
Length 144 amino acids
Sequence (TAIR10)
(BLAST)
001: MADEDYNDVD DLGYEDEPAE PEIEEGVEED VEMKENDDVN GEPIEAEDKV ETEPVQRPRK TSKFMTKYER ARILGTRALQ ISMNAPVMVE LEGETDPLEI
101: AMKELRQRKI PFTIRRYLPD GSFEEWGVDE LIVEDSWKRQ VGGD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)