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AT5G51910.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : TCP family transcription factor
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
TCP family transcription factor ; CONTAINS InterPro DOMAIN/s: Transcription factor, TCP (InterPro:IPR005333), Transcription factor TCP subgroup (InterPro:IPR017887); BEST Arabidopsis thaliana protein match is: TCP family transcription factor (TAIR:AT2G45680.1); Has 731 Blast hits to 731 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 731; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:20511eggNOG:ENOG410J8S1eggNOG:ENOG4111DRYEMBL:AB025623EMBL:AK118579EMBL:AY086379EMBL:BT008779
EMBL:CP002688EnsemblPlants:AT5G51910EnsemblPlants:AT5G51910.1EnsemblPlants:AT5G51910.2entrez:835266GeneID:835266Genevisible:Q9LT89
GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0006355GO:GO:0031347Gramene:AT5G51910.1
Gramene:AT5G51910.2hmmpanther:PTHR31072hmmpanther:PTHR31072:SF32HOGENOM:HOG000243250InParanoid:Q9LT89IntAct:Q9LT89InterPro:IPR005333
InterPro:IPR017887KEGG:ath:AT5G51910OMA:SHEYTIAPaxDb:Q9LT89Pfam:PF03634Pfam:Q9LT89Pfscan:PS51369
PhylomeDB:Q9LT89PRIDE:Q9LT89PRO:PR:Q9LT89PROSITE:PS51369Proteomes:UP000006548RefSeq:NP_200004.1RefSeq:NP_851173.1
STRING:3702.AT5G51910.1TAIR:AT5G51910UniGene:At.29652UniProt:Q9LT89
Coordinates (TAIR10) chr5:-:21094704..21095585
Molecular Weight (calculated) 31462.30 Da
IEP (calculated) 7.55
GRAVY (calculated) -0.47
Length 293 amino acids
Sequence (TAIR10)
(BLAST)
001: MESNHEGNAI QVIDQVTTMT HLSDPNPKTK PGMMLMKQED GYLQPVKTKP APKRPTSKDR HTKVEGRGRR IRMPAGCAAR VFQLTRELGH KSDGETIRWL
101: LERAEPAIIE ATGTGTVPAI AVSVNGTLKI PTSSPVLNDG GRDGDGDLIK KRRKRNCTSD FVDVNDSCHS SVTSGLAPIT ASNYGVNILN VNTQGFVPFW
201: PMGMGTAFVT GGPDQMGQMW AIPTVATAPF LNVGARPVSS YVSNASDAEA EMETSGGGTT QPLRDFSLEI YDKRELQFLG GSGNSSPSSC HET
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)