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AT5G51890.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Peroxidase superfamily protein
Curator
Summary (TAIR10)
encodes peroxidase involved in the lignification of tracheary elements (TE) in roots
Computational
Description (TAIR10)
Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity; INVOLVED IN: response to oxidative stress, oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT5G42180.1); Has 4522 Blast hits to 4498 proteins in 281 species: Archae - 0; Bacteria - 4; Metazoa - 1; Fungi - 153; Plants - 4313; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G51890-MONOMERBioGrid:20509EC:1.11.1.7eggNOG:ENOG410IKGT
eggNOG:ENOG410YFBYEMBL:AB025623EMBL:AY072121EMBL:AY122968
EMBL:CP002688EMBL:Y11792EnsemblPlants:AT5G51890EnsemblPlants:AT5G51890.1
entrez:835264GeneID:835264Genevisible:Q9LT91GO:GO:0004601
GO:GO:0005576GO:GO:0006979GO:GO:0020037GO:GO:0042744
GO:GO:0046872GO:GO:0098869Gramene:AT5G51890.1hmmpanther:PTHR31235
hmmpanther:PTHR31235:SF82HOGENOM:HOG000237556InParanoid:Q9LT91InterPro:IPR000823
InterPro:IPR002016InterPro:IPR010255InterPro:IPR019793KEGG:00940+1.11.1.7
KEGG:ath:AT5G51890KO:K00430OMA:WIVETFAPaxDb:Q9LT91
PeroxiBase:232Pfam:PF00141Pfam:Q9LT91Pfscan:PS50873
PhylomeDB:Q9LT91PRIDE:Q9LT91PRINTS:PR00458PRINTS:PR00461
PRO:PR:Q9LT91PROSITE:PS00435PROSITE:PS50873ProteinModelPortal:Q9LT91
Proteomes:UP000006548RefSeq:NP_200002.3scanprosite:PS00435SMR:Q9LT91
STRING:3702.AT5G51890.1SUPFAM:SSF48113TAIR:AT5G51890UniGene:At.25182
UniProt:Q9LT91
Coordinates (TAIR10) chr5:-:21091163..21092335
Molecular Weight (calculated) 35561.60 Da
IEP (calculated) 9.77
GRAVY (calculated) -0.16
Length 322 amino acids
Sequence (TAIR10)
(BLAST)
001: MAFSKGLIFA MIFAVLAIVK PSEAALDAHY YDQSCPAAEK IILETVRNAT LYDPKVPARL LRMFFHDCFI RGCDASILLD STRSNQAEKD GPPNISVRSF
101: YVIEDAKRKL EKACPRTVSC ADVIAIAARD VVTLSGGPYW SVLKGRKDGT ISRANETRNL PPPTFNVSQL IQSFAARGLS VKDMVTLSGG HTIGFSHCSS
201: FESRLQNFSK FHDIDPSMNY AFAQTLKKKC PRTSNRGKNA GTVLDSTSSV FDNVYYKQIL SGKGVFGSDQ ALLGDSRTKW IVETFAQDQK AFFREFAASM
301: VKLGNFGVKE TGQVRVNTRF VN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)