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AT5G51880.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.998
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, iron ion binding, L-ascorbic acid binding; INVOLVED IN: oxidation reduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Prolyl 4-hydroxylase, alpha subunit (InterPro:IPR006620); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
DNASU:835263eggNOG:ENOG410IK2BeggNOG:ENOG4111WJ6EMBL:AB025623EMBL:CP002688EnsemblPlants:AT5G51880EnsemblPlants:AT5G51880.1
entrez:835263GeneID:835263GO:GO:0005506GO:GO:0016705GO:GO:0031418Gramene:AT5G51880.1hmmpanther:PTHR10869
hmmpanther:PTHR10869:SF80HOGENOM:HOG000196670InterPro:IPR005123InterPro:IPR006620KEGG:ath:AT5G51880OMA:THYTLLIPfam:PF13661
Pfscan:PS51471PhylomeDB:Q9LT92PROSITE:PS51471Proteomes:UP000006548RefSeq:NP_568767.2SMART:SM00702STRING:3702.AT5G51880.1
TAIR:AT5G51880UniGene:At.29654UniProt:Q9LT92
Coordinates (TAIR10) chr5:+:21089395..21090775
Molecular Weight (calculated) 27763.90 Da
IEP (calculated) 9.56
GRAVY (calculated) -0.44
Length 250 amino acids
Sequence (TAIR10)
(BLAST)
001: MNLTNLISLN LILNPPQKPR NAKMGDNGES IKWPKIKLKS NLNVSYLKNH DLFTVENCLT SDESKAFVKI AESLGFTHQG SRGPAYGEAY RDNHRISVND
101: PVLADTLWQS GLSNLFTDIK IRRKVAVGLN PNIRFYRYSA GQHFGRHIDE SADLEDGNRT YYTLLIYLSG NSTKSKSKSS SSKTNDSSSA EPLVGGETVF
201: YGSRNSIVAE VAPVEGMALF HIHGDKCMLH EGRNVSKGVK YVFRSDVVFA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)