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AT5G51670.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 0.663
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF668)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF668); INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: inflorescence meristem, hypocotyl, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF668 (InterPro:IPR007700), Protein of unknown function DUF3475 (InterPro:IPR021864); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF668) (TAIR:AT5G04550.1); Has 324 Blast hits to 279 proteins in 20 species: Archae - 0; Bacteria - 1; Metazoa - 2; Fungi - 0; Plants - 319; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IFHJeggNOG:ENOG410YB4XEMBL:AB025607EMBL:CP002688
EnsemblPlants:AT5G51670EnsemblPlants:AT5G51670.1entrez:835241GeneID:835241
Gramene:AT5G51670.1hmmpanther:PTHR31371hmmpanther:PTHR31371:SF4HOGENOM:HOG000238462
InterPro:IPR007700InterPro:IPR021864KEGG:ath:AT5G51670ncoils:Coil
OMA:MEEMAILPfam:PF05003Pfam:PF11961PhylomeDB:Q9LTD7
Proteomes:UP000006548RefSeq:NP_199980.1STRING:3702.AT5G51670.1TAIR:AT5G51670
UniGene:At.49160UniProt:Q9LTD7
Coordinates (TAIR10) chr5:+:20993560..20995096
Molecular Weight (calculated) 53171.00 Da
IEP (calculated) 9.54
GRAVY (calculated) -0.25
Length 474 amino acids
Sequence (TAIR10)
(BLAST)
001: MALETFLIKL KNAISSKPTS RRPHRSSPPI STTTSSVGVL SFEVARVMTK LLHLTHSLTD SNLLTPRDHS LSLEGLTKIV NGDETFHLSL VCAELADSLA
101: HAANSVSRLS NRCTTASLRS FHRLFHEFAD MGRDPHGWVM NCKDTEAKNK KIERYVSVTT ALYREMEEMA ILENSLRKQS LQIGIEFEEE EDYENKKDVM
201: KVIDLQNKIE RQKQHVKYLK DRSLWNKSFD TVVLILARSV FTALARLKSV FSSAAATGYM VPTVVSSLPR SLSSSSSSMN LVHPSPNDEE RDKTTTSSAF
301: LEESSRLLKP PETTLGGAGV ALHYANLIVV MEKMIKQPQL VGLDARDDLY SMLPASVRSS LRSRLKGVGF TATDGGLATE WKAALGRILR WLLPLAQNMI
401: RWQSERSFEQ QHMATATNSQ NRVMLVQTLV FADKVKTEAA ITELLVGLNY IWRFEREMTA KALFNLQCPP TNYS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)