AT5G51660.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : cleavage and polyadenylation specificity factor 160 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
cleavage and polyadenylation specificity factor 160 (CPSF160); FUNCTIONS IN: nucleic acid binding; INVOLVED IN: mRNA cleavage, mRNA polyadenylation; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cleavage/polyadenylation specificity factor, A subunit, C-terminal (InterPro:IPR004871); BEST Arabidopsis thaliana protein match is: damaged DNA binding protein 1A (TAIR:AT4G05420.2); Has 1568 Blast hits to 1022 proteins in 220 species: Archae - 0; Bacteria - 0; Metazoa - 654; Fungi - 429; Plants - 267; Viruses - 0; Other Eukaryotes - 218 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:20980250..20989268 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 158084.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.08 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.11 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1442 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MSFAAYKMMH WPTGVENCAS GYITHSLSDS TLQIPIVSVH DDIEAEWPNP KRGIGPLPNV VITAANILEV YIVRAQEEGN TQELRNPKLA KRGGVMDGVY 0101: GVSLELVCHY RLHGNVESIA VLPMGGGNSS KGRDSIILTF RDAKISVLEF DDSIHSLRMT SMHCFEGPDW LHLKRGRESF PRGPLVKVDP QGRCGGVLVY 0201: GLQMIILKTS QVGSGLVGDD DAFSSGGTVS ARVESSYIIN LRDLEMKHVK DFVFLHGYIE PVIVILQEEE HTWAGRVSWK HHTCVLSALS INSTLKQHPV 0301: IWSAINLPHD AYKLLAVPSP IGGVLVLCAN TIHYHSQSAS CALALNNYAS SADSSQELPA SNFSVELDAA HGTWISNDVA LLSTKSGELL LLTLIYDGRA 0401: VQRLDLSKSK ASVLASDITS VGNSLFFLGS RLGDSLLVQF SCRSGPAASL PGLRDEDEDI EGEGHQAKRL RMTSDTFQDT IGNEELSLFG STPNNSDSAQ 0501: KSFSFAVRDS LVNVGPVKDF AYGLRINADA NATGVSKQSN YELVCCSGHG KNGALCVLRQ SIRPEMITEV ELPGCKGIWT VYHKSSRGHN ADSSKMAADE 0601: DEYHAYLIIS LEARTMVLET ADLLTEVTES VDYYVQGRTI AAGNLFGRRR VIQVFEHGAR ILDGSFMNQE LSFGASNSES NSGSESSTVS SVSIADPYVL 0701: LRMTDDSIRL LVGDPSTCTV SISSPSVLEG SKRKISACTL YHDKGPEPWL RKASTDAWLS SGVGEAVDSV DGGPQDQGDI YCVVCYESGA LEIFDVPSFN 0801: CVFSVDKFAS GRRHLSDMPI HELEYELNKN SEDNTSSKEI KNTRVVELAM QRWSGHHTRP FLFAVLADGT ILCYHAYLFD GVDSTKAENS LSSENPAALN 0901: SSGSSKLRNL KFLRIPLDTS TREGTSDGVA SQRITMFKNI SGHQGFFLSG SRPGWCMLFR ERLRFHSQLC DGSIAAFTVL HNVNCNHGFI YVTAQGVLKI 1001: CQLPSASIYD NYWPVQKIPL KATPHQVTYY AEKNLYPLIV SYPVSKPLNQ VLSSLVDQEA GQQLDNHNMS SDDLQRTYTV EEFEIQILEP ERSGGPWETK 1101: AKIPMQTSEH ALTVRVVTLL NASTGENETL LAVGTAYVQG EDVAARGRVL LFSFGKNGDN SQNVVTEVYS RELKGAISAV ASIQGHLLIS SGPKIILHKW 1201: NGTELNGVAF FDAPPLYVVS MNVVKSFILL GDVHKSIYFL SWKEQGSQLS LLAKDFESLD CFATEFLIDG STLSLAVSDE QKNIQVFYYA PKMIESWKGL 1301: KLLSRAEFHV GAHVSKFLRL QMVSSGADKI NRFALLFGTL DGSFGCIAPL DEVTFRRLQS LQKKLVDAVP HVAGLNPLAF RQFRSSGKAR RSGPDSIVDC 1401: ELLCHYEMLP LEEQLELAHQ IGTTRYSILK DLVDLSVGTS FL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)