AT5G51630.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.844 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Disease resistance protein (TIR-NBS-LRR class) family | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT4G16890.1); Has 26294 Blast hits to 18044 proteins in 708 species: Archae - 26; Bacteria - 1938; Metazoa - 2435; Fungi - 200; Plants - 20794; Viruses - 0; Other Eukaryotes - 901 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:20970069..20974666 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 139530.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.10 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.17 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1229 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MASSSSRSWT YDVFPSFSGE DVRKSFLSHL LKKLHRKSIN TFIDNNIERS HAIAPDLLSA INNSMISIVV FSKKYASSTW CLNELVEIHK CYKELTQIVI 0101: PIFYEVDPSD VRKQTREFGE FFKVTCVGKT EDVKQQWIEA LEEVASIAGH DSKNWPNEAN MIEHIAKDVL NKLIATSSSN CFGDLVGIEA HLKAVKSILC 0201: LESEEARMVG ILGPSGIGKT TIARILYSKL SSQFDYHVFG SFKRTNQDNY GMKLSWEEQF LSEILDQKDL KISQLGVVKQ RLKHKKVLIV LDDVDNLELL 0301: KTLVGQTGWF GPGSRIIVTT QDRILLKSHK IDHIYEVGYP SRKLALRILC RSAFDRNSPP DGFMQLANEV TELVGNLPLA LNIMGSSLKG RDKEEWIEMM 0401: PSLRNSLVDG EILKTLRVSY DRLHGNYQEI FLYIACLLNC CGVEYIISML GDNAIIGLKI LAEKSLIHIS PLDKTVEMHS LLQKLGRKIV RDESFGNPGK 0501: RRFLLDAEDI CDVFTDNTGT ETVLGISLNT LEINGTLSVD DKSFQGMHNL QFLKVFENWR RGSGEGILSL PQGLNSLPRK LRLLHWYKFP LRCMPSNFKA 0601: EYLVNLEMAY SQLERLWEGT QQLGSLKKMD LSKSENLKEI PDLSYAVNLE EMDLCSCKSL VTLPSSVRNL DKLRVLRMSS CSNVEVLPTD LNLESLDLLN 0701: LEDCSQLRSF PQISRNISIL NLSGTAIDEE SSLWIENMSR LTHLRWDFCP LKSLPSNFRQ EHLVSLHMTH SKLEKLWEGA QPFGNLVNID LSLSEKLKEF 0801: PNLSKVTNLD TLDLYGCKSL VTVPSSIQSL SKLTELNMRR CTGLEALPTD VNLESLHTLD LSGCSKLTTF PKISRNIERL LLDDTAIEEV PSWIDDFFEL 0901: TTLSMKGCKR LRNISTSICE LKCIEVANFS DCERLTEFDD ASMVRRILRT IDDLIALYEE ASFLHAIFVL CRKLVSICAM VFKYPQALSY FFNSPEADLI 1001: FANCSSLDRD AETLILESNH GCAVLPGGKV PNCFMNQACG SSVSIPLHES YYSEEFLGFK ACIVLETPPD LNFKQSWIWV RCYFRDKCVE HSVQFSWDSN 1101: KMDHLLMINF RLPTKEIIGC PSQLDTDDLM FFFYHHMYYA CNSYVNPSPC SVQRIKGCGI KFWDVSPRVL SQSELDTYFS WPVKGEGEAE GESEGESEDE 1201: QEEDEDEDAY LEIEDDSSLS SFVGGGEYW |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)