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AT5G51590.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.500
nucleus 0.500
ASURE: cytosol,nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : AT hook motif DNA-binding family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
AT hook motif DNA-binding family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), AT hook, DNA-binding motif (InterPro:IPR017956); BEST Arabidopsis thaliana protein match is: AT hook motif DNA-binding family protein (TAIR:AT4G25320.1); Has 1243 Blast hits to 1178 proteins in 110 species: Archae - 0; Bacteria - 11; Metazoa - 305; Fungi - 62; Plants - 787; Viruses - 15; Other Eukaryotes - 63 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JUE5eggNOG:ENOG41106YPEMBL:AB018109EMBL:AB493788EMBL:BR000340EMBL:CP002688EnsemblPlants:AT5G51590
EnsemblPlants:AT5G51590.1entrez:835233GeneID:835233Genevisible:Q9FHM5GO:GO:0003677GO:GO:0005634GO:GO:0006351
GO:GO:0006355GO:GO:0010051GO:GO:0010089GO:GO:0043621Gramene:AT5G51590.1hmmpanther:PTHR31500hmmpanther:PTHR31500:SF18
HOGENOM:HOG000116506InterPro:IPR005175KEGG:ath:AT5G51590OMA:HEPSTNTPaxDb:Q9FHM5Pfam:PF03479Pfam:Q9FHM5
Pfscan:PS51742PhylomeDB:Q9FHM5PRIDE:Q9FHM5PRO:PR:Q9FHM5PROSITE:PS51742ProteinModelPortal:Q9FHM5Proteomes:UP000006548
RefSeq:NP_199972.1SMR:Q9FHM5SUPFAM:SSF117856TAIR:AT5G51590UniGene:At.46739UniProt:Q9FHM5
Coordinates (TAIR10) chr5:-:20956863..20958929
Molecular Weight (calculated) 44596.70 Da
IEP (calculated) 6.19
GRAVY (calculated) -0.70
Length 419 amino acids
Sequence (TAIR10)
(BLAST)
001: MEEREGTNIN NIPTSFGLKQ HETPLPPPGY PPRSENPNLF PVGQSSTSSA AAAVKPSENV APPFSLTMPV ENSSSELKKK RGRPRKYNPD GSLAVTLSPM
101: PISSSVPLTS EFGSRKRGRG RGRGRGRGRG RGQGQGSREP NNNNNDNNWL KNPQMFEFNN NTPTSGGGGP AEIVSPSFTP HVLTVNAGED VTMKIMTFSQ
201: QGSRAICILS ANGPISNVTL RQSMTSGGTL TYEGHFEILS LTGSFIPSES GGTRSRAGGM SVSLAGQDGR VFGGGLAGLF IAAGPVQVMV GSFIAGQEES
301: QQQQQQIKKQ RRERLGIPTT TQASNISFGG SAEDPKARYG LNKPVVIQPP PVSAPPVSFS HEPSTNTVHG YYANNTANHI KDLFSSLPGE DREEDEDDLE
401: GEDDEEFGGH SESDTEVPS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)