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AT5G51570.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 0.897
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23667806 (2013): plastid plastid thylakoid
  • PMID:22923678 (2012): plant-type vacuole
  • PMID:22430844 (2012): Golgi
  • PMID:22215637 (2012): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:17644812 (2007): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:15215502 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : SPFH/Band 7/PHB domain-containing membrane-associated protein family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SPFH/Band 7/PHB domain-containing membrane-associated protein family; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Band 7 protein (InterPro:IPR001107); BEST Arabidopsis thaliana protein match is: SPFH/Band 7/PHB domain-containing membrane-associated protein family (TAIR:AT5G62740.1); Has 5870 Blast hits to 5870 proteins in 1885 species: Archae - 189; Bacteria - 4209; Metazoa - 145; Fungi - 209; Plants - 268; Viruses - 20; Other Eukaryotes - 830 (source: NCBI BLink).
Protein Annotations
BioGrid:20476eggNOG:COG0330eggNOG:KOG2620EMBL:AB018109EMBL:AK227961EMBL:BT006203EMBL:CP002688
EnsemblPlants:AT5G51570EnsemblPlants:AT5G51570.1entrez:835231GeneID:835231Genevisible:Q9FHM7GO:GO:0005773GO:GO:0005774
GO:GO:0005794GO:GO:0005886GO:GO:0009506Gramene:AT5G51570.1hmmpanther:PTHR10264hmmpanther:PTHR10264:SF69HOGENOM:HOG000035168
InParanoid:Q9FHM7IntAct:Q9FHM7InterPro:IPR001107InterPro:IPR001972KEGG:ath:AT5G51570OMA:YELQNPKPANTHER:PTHR10264
PaxDb:Q9FHM7Pfam:PF01145Pfam:Q9FHM7PhylomeDB:Q9FHM7PRIDE:Q9FHM7PRO:PR:Q9FHM7ProteinModelPortal:Q9FHM7
Proteomes:UP000006548RefSeq:NP_199970.1SMART:SM00244STRING:3702.AT5G51570.1SUPFAM:0050593SUPFAM:SSF117892SwissPalm:Q9FHM7
TAIR:AT5G51570UniGene:At.7811UniProt:Q9FHM7
Coordinates (TAIR10) chr5:+:20949511..20951234
Molecular Weight (calculated) 32380.00 Da
IEP (calculated) 5.08
GRAVY (calculated) -0.12
Length 292 amino acids
Sequence (TAIR10)
(BLAST)
001: MGNTYCILGG CIEQASVGVV ERWGRFEHIA EPGCHFFNPL AGQWLAGVLS TRIKSLDVKI ETKTKDNVFV QLVCSIQYRV VKASADDAFY ELQNPKEQIQ
101: AYVFDVVRAL VPMMTLDALF EQKGEVAKSV LEELEKVMGA YGYSIEHILM VDIIPDPSVR KAMNEINAAQ RLQLASVYKG EAEKILQVKR AEAEAEAKYL
201: GGVGVARQRQ AITDGLRENI LNFSDKVEGT SAKEVMDLIM ITQYFDTIRD LGNSSKNTTV FLPHGPGHVR DISDQIRNGM MEAAASTQVN DV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)